BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3185.p
         (188 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981884|ref|YP_001354190.1| NUDIX hydrolase [Janthinobacter...   289   8e-80

>gi|152981884|ref|YP_001354190.1| NUDIX hydrolase [Janthinobacterium
           sp. Marseille]
          Length = 226

 Score =  289 bits (739), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 133/188 (70%), Positives = 155/188 (82%), Gaps = 1/188 (0%)

Query: 1   MKFCSECGQTVSQQIPPDDTRLRYVCSNCGAIHYQNPKMVVGSIPVWEQDGQVKVLLCKR 60
           MKFCSEC   VS  IP  D R RYVC NCGAIHYQNPKMV+GSIPVW++DG +++LLCKR
Sbjct: 32  MKFCSECAHPVSLSIPEGDNRPRYVCGNCGAIHYQNPKMVLGSIPVWDEDGDMRILLCKR 91

Query: 61  AIEPRLGYWTLPAGFMENDETTEDAARRETEEEAGARVQLHELFSLVNVPHVHQVHLFYR 120
           AIEPRLGYWTLPAGFMEN+ETT +AA RET EEAGA ++LHELFSL+NVPHVHQVH+FYR
Sbjct: 92  AIEPRLGYWTLPAGFMENNETTSNAAIRETVEEAGANIRLHELFSLLNVPHVHQVHMFYR 151

Query: 121 ATLLDLDYHAGVESLEVELYTEAQIPWQDIAFPTVEFTLRAFFADMKKVRSGEGGFTLHT 180
           ATLLDL+Y AG+ESLEV+L+    IPW+DIAFPTV  TL+ F AD  KV+SG G +  HT
Sbjct: 152 ATLLDLNYEAGIESLEVKLFAPEDIPWEDIAFPTVHHTLKFFLADHAKVKSG-GSYGFHT 210

Query: 181 EDIRRRMI 188
            DI + M+
Sbjct: 211 LDILKPML 218


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 398,637
Number of extensions: 13882
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 110
Effective length of database: 932,655
Effective search space: 102592050
Effective search space used: 102592050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)