BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3178.p (542 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 477 e-136 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 463 e-131 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 438 e-124 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 423 e-119 gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis pro... 421 e-119 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 477 bits (1227), Expect = e-136, Method: Compositional matrix adjust. Identities = 280/516 (54%), Positives = 370/516 (71%), Gaps = 6/516 (1%) Query: 3 FQDLSIGTRLGIAFATLVLIIIGIVILGLSRLSEVNESLDHVVNDRYKKVAIINTISSNT 62 ++L IG RL ++F ++V++++ + L +R+ +N+++ V DRY K + N + + Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 63 DDIALSVRNRLISSNRTEAAQEKVEADRLLAENTKLYEQLTQL--IIRPKAKSQLERVIQ 120 + IA ++RN L+ TE A + E ++ L L +L +R + Q +Q Sbjct: 61 NQIARNMRNALL---MTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQ 117 Query: 121 A-RSEYSAVMLEVIRLQELDDRDSAVELLRTKMAPLQKKYMKELDGLSDTQQELMNQAVV 179 A RS++ + + I+L +D AV LL ++ P Q Y+ +D L D Q ELM ++ Sbjct: 118 ADRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGA 177 Query: 180 EAKENYENTRLTMVASGLVASIFAVLVALLISRGITSPLNQALSVAEQVAAGDLTSEIQQ 239 EA T+L + ++A + A + A+L +R IT PL+QA+ +A +VA GDLT I Sbjct: 178 EANAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVV 237 Query: 240 SQKDETGRLLQALAVMNQKLKDIVKEVRHGTDSMVTASTQIATGNLDLSSRTEEQASSLE 299 KDETG+LLQAL MN+ L IV +VR GTD++ +AS QIATGNLDLSSRTE+QASSLE Sbjct: 238 ESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLE 297 Query: 300 ETASSMEELTSTVKQNAEHSRKASELALHSSQIAKQGGTVVEKVVQTMSSINDSSNKIVD 359 ETASSMEELTSTVKQNAE++R++++LAL +S++A +GG VV KVV TM INDS+ KIVD Sbjct: 298 ETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVD 357 Query: 360 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRVLAQRSATAAKEIKELIQN 419 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIKELI + Sbjct: 358 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGD 417 Query: 420 SVDKVSSGSELVAEAGQTMNEVVASIQQVTNIVTEISEATREQSDGIEQVNQAVMQMDQV 479 SVDKVS GS LV +AG TM EVV S+++VT+I++EI+ A++EQ+DGIEQ+NQAVMQMDQV Sbjct: 418 SVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQV 477 Query: 480 TQQNAALVEEAAAAAQSLQDQAKRLSTVVSVFRIDA 515 TQQNAALVEEAAAAA+SLQ QA LS VV VF++D Sbjct: 478 TQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDG 513 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 463 bits (1191), Expect = e-131, Method: Compositional matrix adjust. Identities = 281/516 (54%), Positives = 375/516 (72%), Gaps = 6/516 (1%) Query: 3 FQDLSIGTRLGIAFATLVLIIIGIVILGLSRLSEVNESLDHVVNDRYKKVAIINTISSNT 62 ++L IG RL ++F ++V ++I + ++ +RL +++ ++ V NDRY K + I Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 63 DDIALSVRNRLISSNRTEAAQEKVEADRLLAENTKLYEQLTQL---IIRPKAKSQLERVI 119 ++ A ++RN L+ T+AAQ K E D + + + E L +L I K ++ ++ + Sbjct: 61 NETARNMRNALL---MTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALT 117 Query: 120 QARSEYSAVMLEVIRLQELDDRDSAVELLRTKMAPLQKKYMKELDGLSDTQQELMNQAVV 179 AR ++ V + + L R A LL ++ P Q +YM LD L + Q LM++A Sbjct: 118 DARGRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGE 177 Query: 180 EAKENYENTRLTMVASGLVASIFAVLVALLISRGITSPLNQALSVAEQVAAGDLTSEIQQ 239 +A E N + + ++A I + + L +R IT PL+QA+ +A +VA GDLT I Sbjct: 178 DAHEVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVV 237 Query: 240 SQKDETGRLLQALAVMNQKLKDIVKEVRHGTDSMVTASTQIATGNLDLSSRTEEQASSLE 299 + KDETG+LLQAL MN L IV +VR GTD++ TAS+QIATGNLDLSSRTEEQASSLE Sbjct: 238 TSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLE 297 Query: 300 ETASSMEELTSTVKQNAEHSRKASELALHSSQIAKQGGTVVEKVVQTMSSINDSSNKIVD 359 ETASSMEELTSTVKQNA+++R++++LAL +S++A +GG VV +VV+TM SINDS+NKIVD Sbjct: 298 ETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVD 357 Query: 360 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRVLAQRSATAAKEIKELIQN 419 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK LI + Sbjct: 358 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDD 417 Query: 420 SVDKVSSGSELVAEAGQTMNEVVASIQQVTNIVTEISEATREQSDGIEQVNQAVMQMDQV 479 SV+KV++GS LV +AG TM EVV S+++VT+I+ EI+ A++EQ+DGIEQ+NQAVMQMDQV Sbjct: 418 SVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQV 477 Query: 480 TQQNAALVEEAAAAAQSLQDQAKRLSTVVSVFRIDA 515 TQQNAALVEEAAAAA+SLQDQA LS VVSVF++DA Sbjct: 478 TQQNAALVEEAAAAAESLQDQANNLSQVVSVFKLDA 513 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 438 bits (1127), Expect = e-124, Method: Compositional matrix adjust. Identities = 267/529 (50%), Positives = 364/529 (68%), Gaps = 4/529 (0%) Query: 1 MRFQDLSIGTRLGIAFATLVLIIIGIVILGLSRLSEVNESLDHVVNDRYKKVAIINTISS 60 M+ +L IG RLG+AFA ++L++ ++++G+ RL +V ++ H+ +K+ Sbjct: 1 MKISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEEAAHKERLTHEWYLG 60 Query: 61 NTDDIALSVRNRLISSNRTEAAQEKVEADRLLAENTKLYEQLTQLIIRPKAKSQLERVIQ 120 N + A+ R+ S++ Q + E + E +KL ++ LI + K + V + Sbjct: 61 NVAN-AIRTAARIRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKLMSVVGE 119 Query: 121 ARSEYSAVMLEVIRLQELDDRDSA---VELLRTKMAPLQKKYMKELDGLSDTQQELMNQA 177 R+ Y + +V +L+ + + +L+ TKM P Y + + + QQ + +A Sbjct: 120 KRTAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQVIFQRA 179 Query: 178 VVEAKENYENTRLTMVASGLVASIFAVLVALLISRGITSPLNQALSVAEQVAAGDLTSEI 237 + Y + R ++ G +A I + +A L+SR IT PL+ A+SVA VA+GDL ++I Sbjct: 180 KADVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVASGDLRNKI 239 Query: 238 QQSQKDETGRLLQALAVMNQKLKDIVKEVRHGTDSMVTASTQIATGNLDLSSRTEEQASS 297 Q S DETG+LL+AL MN L V +VR G +++ TAS QIA GNLDLSSRTEEQASS Sbjct: 240 QSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQASS 299 Query: 298 LEETASSMEELTSTVKQNAEHSRKASELALHSSQIAKQGGTVVEKVVQTMSSINDSSNKI 357 LEETASSMEELTSTVKQNA+++R+A++LA+ +S +A++GG VV +VV TM IN S+ KI Sbjct: 300 LEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKI 359 Query: 358 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRVLAQRSATAAKEIKELI 417 VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK LI Sbjct: 360 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLI 419 Query: 418 QNSVDKVSSGSELVAEAGQTMNEVVASIQQVTNIVTEISEATREQSDGIEQVNQAVMQMD 477 +SVDKV GS+LV EAG TM+EVV S++ VT+I++EI A++EQS GIEQVNQA+ QMD Sbjct: 420 GDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMD 479 Query: 478 QVTQQNAALVEEAAAAAQSLQDQAKRLSTVVSVFRIDALDHPQAPAAKV 526 QVTQQNAALVEEAAAAA+SL +QA +L+ VSVF++D++ AP+ KV Sbjct: 480 QVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKLDSITAAAAPSKKV 528 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 423 bits (1088), Expect = e-119, Method: Compositional matrix adjust. Identities = 261/526 (49%), Positives = 362/526 (68%), Gaps = 15/526 (2%) Query: 1 MRFQDLSIGTRLGIAFATLVLIIIGIVILGLSRLSEVNESLDHVVNDRYKKVAIINTISS 60 M+ +L I TRL FA L+ +++ + ++G+ RL EV S D + K + S Sbjct: 1 MKITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLS 60 Query: 61 NTDDIALSVRN-RLISSNRTEAAQEKV----EADRLLAENTKLYEQLTQLIIRPKAKSQL 115 A+ V R ++S +T +A+++ + D+ +L +++ +I P+ K Sbjct: 61 -----AVDVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLF 115 Query: 116 ERVIQARSEYSAVMLEVIRLQELDDRDSAVELLRTKMAPLQKKYMKELDGLSDTQQELMN 175 E ++ AR+ Y + V +L+ A L+ KM P Y +D + +++L++ Sbjct: 116 EELVVARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLID 175 Query: 176 QAVVEAKENYENTRLTMVASGLVASIFA--VLVALLISRGITSPLNQALSVAEQVAAGDL 233 +A + + + R ++ GL+A+ A V A ++ IT PLN+A++VA VA+GDL Sbjct: 176 EAGTSIQSAFLSGRSLLI--GLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDL 233 Query: 234 TSEIQQSQKDETGRLLQALAVMNQKLKDIVKEVRHGTDSMVTASTQIATGNLDLSSRTEE 293 +++I+ S DETG+L+QAL M Q L V EVR GT+++ TAS QIA+GNLDLSSRTEE Sbjct: 234 SAKIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEE 293 Query: 294 QASSLEETASSMEELTSTVKQNAEHSRKASELALHSSQIAKQGGTVVEKVVQTMSSINDS 353 QASSL ETA+SM +LTSTV+QNA+++R+A+ LA+ +S +A +GG+VV +VV TM+SIN+S Sbjct: 294 QASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINES 353 Query: 354 SNKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRVLAQRSATAAKEI 413 + KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEI Sbjct: 354 ARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEI 413 Query: 414 KELIQNSVDKVSSGSELVAEAGQTMNEVVASIQQVTNIVTEISEATREQSDGIEQVNQAV 473 K LI +SV KV +GS+LV EAG TMNE+V S+++VT+I+ EI A++EQS GI+QVNQA+ Sbjct: 414 KILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAI 473 Query: 474 MQMDQVTQQNAALVEEAAAAAQSLQDQAKRLSTVVSVFRIDALDHP 519 QMDQVTQQNAALVEEAAAAA+SLQDQA L+ VVS F++D + P Sbjct: 474 GQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLDG-NQP 518 >gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 573 Score = 421 bits (1083), Expect = e-119, Method: Compositional matrix adjust. Identities = 256/528 (48%), Positives = 359/528 (67%), Gaps = 12/528 (2%) Query: 1 MRFQDLSIGTRLGIAFATLVLIIIGIVILGLSRLSEVNESLDHVVNDRYKKVAIINTISS 60 M+F +L IGTRL I F ++ ++ + G++ + + + L+ +++D K+ ++ +S Sbjct: 1 MKFSNLKIGTRLTIGFFLVLALMAALTACGVNGMQNIQKRLNTIIDDNVHKMNLLQDMSE 60 Query: 61 NTDDIALSVRNRLISSNRTEAAQEKVEADRLLAENTKLYEQLTQLIIRPKAKSQLERVIQ 120 + ++ S+ ++ N +E +E +++ +K + L++ K ++ERV++ Sbjct: 61 SVHIVSHSMGTLVLMRNESEMV---LEIKKVVDARSKYDAAI--LVLEKKPALEVERVLR 115 Query: 121 -----ARSEYSAVMLEVIRLQELDDRDSAVELLRTKMAPLQKKYMKELDGLSDTQQELMN 175 A+++ V ++I + + A LL PL + + + LD Q+ Sbjct: 116 EKIKGAQADARVVNDQIIEFARGNKDEEASALLIKTAEPLNQAWQQALDQSIQLQKHANE 175 Query: 176 QAVVEAKENYENTRLTMVASGLVASIFAVLVALLISRGITSPLNQALSVAEQVAAGDLTS 235 V A YEN++L M A VA I +++A +I+R I+ P+ A++VA VA GDLTS Sbjct: 176 ADAVAATATYENSQLYMGALSGVALILGIVIAWVITRSISRPIISAMNVANTVALGDLTS 235 Query: 236 EIQQSQKDETGRLLQALAVMNQKLKDIVKEVRHGTDSMVTASTQIATGNLDLSSRTEEQA 295 I+ + DE+G+LL AL MN L IV +VRHGT+++ TAS +IATGNLDLS+RTEEQA Sbjct: 236 HIEITTADESGQLLHALKDMNDNLVSIVTQVRHGTETIATASAEIATGNLDLSARTEEQA 295 Query: 296 SSLEETASSMEELTSTVKQNAEHSRKASELALHSSQIAKQGGTVVEKVVQTMSSINDSSN 355 SSLE+TASSMEELTSTVK N +++R+A++LAL++S A +GG VV +VV+TM IN SS Sbjct: 296 SSLEQTASSMEELTSTVKHNFDNARQANKLALNASDAASRGGVVVAQVVETMGFINGSSR 355 Query: 356 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRVLAQRSATAAKEIKE 415 KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRS+ AAK+I+ Sbjct: 356 KISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSSAAAKDIRI 415 Query: 416 LIQNSVDKVSSGSELVAEAGQTMNEVVASIQQVTNIVTEISEATREQSDGIEQVNQAVMQ 475 LI +SV K+ +GS LV EAG+TM E+V S+QQVT+I+ EI+ A+ EQS GIEQVNQA+ Q Sbjct: 416 LIGSSVQKIDAGSLLVEEAGRTMKEIVISVQQVTSIMAEITAASEEQSAGIEQVNQAIAQ 475 Query: 476 MDQVTQQNAALVEEAAAAAQSLQDQAKRLSTVVSVFRIDALDH--PQA 521 MDQVTQQNAALVEEAAAAA SL++QA+ LS VV VF++D H P A Sbjct: 476 MDQVTQQNAALVEEAAAAAASLREQAENLSKVVRVFKLDNTQHMMPMA 523 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.311 0.124 0.306 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 820,563 Number of extensions: 25103 Number of successful extensions: 261 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 21 Length of query: 542 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 454 Effective length of database: 895,685 Effective search space: 406640990 Effective search space used: 406640990 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 132 (55.5 bits)