BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3176.p
         (138 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and...    64   4e-12
gi|152982458|ref|YP_001353582.1| sensor histidine kinase/respons...    58   3e-10
gi|152981341|ref|YP_001354865.1| two-components system response ...    55   2e-09

>gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and
            regulator [Janthinobacterium sp. Marseille]
          Length = 1901

 Score = 63.9 bits (154), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 56/84 (66%)

Query: 10   TGRILLVVEDNVEVSSLFSAVLAIEGYTVMEARNGMKALELMERHPIDVILTDLKMPVMD 69
            T  I++VV+D++ V  +   +L  EGY V+ A++G+ AL+ ++    DV+L D++MP MD
Sbjct: 1775 TQSIVMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQSVTPDVMLVDIEMPRMD 1834

Query: 70   GLEFAQKVKADERFAHIPIVLLSA 93
            G +  + ++ DER   IPI+++++
Sbjct: 1835 GFDLTRNIRDDERTRDIPIIMITS 1858


>gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response
            regulator [Janthinobacterium sp. Marseille]
          Length = 1096

 Score = 57.8 bits (138), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 5/120 (4%)

Query: 8    TGTGRILLVVEDNVEVSSLFSAVLAIEGYTVMEARNGMKALELMERHPIDVILTDLKMPV 67
            TG  R LLVV+D      + S +L   G+ V EA +G + ++L++    D IL D+ M  
Sbjct: 886  TGVARTLLVVDDQPVQRHMLSGMLIPLGFNVREAASGHECIDLLQDFVPDAILLDIGMDG 945

Query: 68   MDGLEFAQKVKADERFAHIPIVLLSATPMTNSGEALQTFSA--LLTKPCPLEEVILTVNR 125
            MDG E A++V+A    + IPI+ +SA    N    L+       + KP    E++L + R
Sbjct: 946  MDGWETARRVRAS---SGIPIIFVSADLFENDPVKLKAAGCQDFVGKPVLESELMLALQR 1002


>gi|152981341|ref|YP_001354865.1| two-components system response
           regulator [Janthinobacterium sp. Marseille]
          Length = 229

 Score = 55.1 bits (131), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 14  LLVVEDNVEVSSLFSAVLAIEGYTVMEARNGMKALELMERHPIDVILTDLKMPVMDGLEF 73
           +L++EDN ++ +   A L   GY +  A NG     L  +H  D ++ D+K+P +DGL  
Sbjct: 3   ILIIEDNADIVANLYAFLEPRGYVLDSAANGYAGFALAAQHDYDAVILDIKLPGIDGLTL 62

Query: 74  AQKVKADERFAHIPIVLLSATPMTNSGEALQTFSA--LLTKPCPLEEV 119
            +K++ DE     P+++L+A    +   A     A   L KP  L EV
Sbjct: 63  CRKMR-DELQKDTPVLMLTARDTLDDKVAGFDSGADDYLVKPFSLLEV 109


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 292,675
Number of extensions: 10269
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 3
Length of query: 138
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 64
Effective length of database: 947,443
Effective search space: 60636352
Effective search space used: 60636352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)