BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3173.p
         (400 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980053|ref|YP_001353762.1| succinyl-diaminopimelate desucc...    69   7e-13
gi|152981445|ref|YP_001351721.1| hypothetical protein mma_0031 [...    68   1e-12

>gi|152980053|ref|YP_001353762.1| succinyl-diaminopimelate
           desuccinylase [Janthinobacterium sp. Marseille]
          Length = 375

 Score = 68.6 bits (166), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 96/223 (43%), Gaps = 26/223 (11%)

Query: 64  NLFATLGDAGPGRFGTVFSGHTDVVPVTG--QNWDTDPFLAHVADGKLFGRGACDMKGFI 121
           NL+A  G   P     VF+GHTDVVP TG  + W + PF+    +GKL+GRGA DMK  I
Sbjct: 49  NLWARKGTTQPL---LVFAGHTDVVP-TGPLEQWTSPPFVPTQREGKLYGRGAADMKTSI 104

Query: 122 AVCLARLPAIAQDRLHTPLH-----FSFSYDEE-VGCLGVRELLADLQRNDIKPTGVIIG 175
           A  +       Q     P H     F  + DEE     G   +   L+    +    ++G
Sbjct: 105 AAMVVAAEEFVQAH---PAHKGSIGFLITSDEEGPATDGTVIVCNALKARGEQLDYCVVG 161

Query: 176 EPT---MMQPVIAH--KGKRSYRCSVHGHAAHSSCPHLGINSIDYAAMMQLKIREIALRV 230
           EPT   ++   I +  +G  S + +V G   H + P L  N I   A        +A  V
Sbjct: 162 EPTSSDVLGDTIKNGRRGSMSGKLTVKGIQGHIAYPQLARNPIHQCA------PALAELV 215

Query: 231 RHSEVQDYDFDVPYSSIVTTLSNGGNAPNIIPDKAEFVFEHRF 273
                   ++ +P S  V+ +  G  A N+IP      F  RF
Sbjct: 216 AEKWDDGNEYYLPTSWQVSNIHGGAGASNVIPGNVVIDFNFRF 258


>gi|152981445|ref|YP_001351721.1| hypothetical protein mma_0031
           [Janthinobacterium sp. Marseille]
          Length = 410

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 134/313 (42%), Gaps = 23/313 (7%)

Query: 81  FSGHTDVVPVTGQNWDTDPFLAHVADGKLFGRGACDMKGFIAVCLARLPAIAQDRLHTPL 140
            + H DVVP  G  W  DP+ A V DG + GRGA   K   A     L A+ +  L  PL
Sbjct: 93  LNAHGDVVP-PGAGWSVDPYSATVRDGWMIGRGAAVSKSDFATYAFALRALKE--LSIPL 149

Query: 141 ----HFSFSYDEEVGCLGVRELLADLQRNDIKPTGVIIGEPTMMQPVIAHKGKRSYRCSV 196
                   +YDEE G L     L  LQ+   KP   I    +      AH G       V
Sbjct: 150 RGQVELHLTYDEETGGLAGPGWL--LQQGLSKPDYAICAGFS-YNVTTAHNGCLHLEIKV 206

Query: 197 HGHAAHSSCPHLGINSIDYAAMMQLKIREI--ALRVRHSEVQDYDFDVPYSSIVTTLSNG 254
           HG +AH++ P  G ++++ A  +   + +   +L+ R S +      +   S+V  + NG
Sbjct: 207 HGTSAHAARPDTGHDALEAATKLLSALYDYRNSLQQRTSAIS----GITSPSLVVGMING 262

Query: 255 GNAPNIIPDKAEFVFEHRFLPGIDPGEVFEEVKRYAEQEVLPQMHIEGAQGRIEFETLTA 314
           G   N++PD+     + R +P   P EV  E++   E  +     I     RI   +   
Sbjct: 263 GINTNVVPDEVTLRLDRRIIPEEIPEEVEAELRAVIENTLRGMPGIRSEVKRILLASPFK 322

Query: 315 YPGMSTSPDDPLVSSALRILGSERARKVG--FGTEGGLFGQAGMPAVI--CGPGDIVHA- 369
             G +    D + + A   LG E    +G    ++  L+ +AG+  V+   GP  ++ A 
Sbjct: 323 PVGDAARLRDIVCTEASAALG-EAVTPIGVPLYSDARLYAEAGVATVMYGAGPRTLLEAN 381

Query: 370 -HKPNEFVTLEQL 381
            H+ +E V L  L
Sbjct: 382 GHRADEKVPLFTL 394


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,023,826
Number of extensions: 46109
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 400
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 315
Effective length of database: 906,776
Effective search space: 285634440
Effective search space used: 285634440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)