BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3172.p (385 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981192|ref|YP_001353300.1| major facilitator transporter [... 362 e-101 gi|152981427|ref|YP_001351784.1| major facilitator transporter [... 114 1e-26 gi|152981201|ref|YP_001353559.1| major facilitator superfamily d... 96 5e-21 gi|152981547|ref|YP_001354871.1| major facilitator transporter [... 79 4e-16 gi|152982589|ref|YP_001352814.1| major facilitator superfamily m... 55 6e-09 >gi|152981192|ref|YP_001353300.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 390 Score = 362 bits (929), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/382 (52%), Positives = 258/382 (67%), Gaps = 1/382 (0%) Query: 5 LFALAVAAFGIGTTEFVIMGLLPDVAGDLKVSAPAAGMLVSGYALGVAAGAPILAILTAK 64 L LA++AF IGTTEFVIMGLLPDVA L VS P+AG L+SGYALGVA GAPI+A+ TA Sbjct: 5 LVILALSAFAIGTTEFVIMGLLPDVARSLSVSIPSAGWLISGYALGVAIGAPIMAVATAS 64 Query: 65 WPRKQALVGLMCLFILGNVLCAMAPNYNFLMVARVVTAFCHAAFFGIGSVVAAELVPPQK 124 PRK+AL+ LM +FI+GNVLCA+A NYNFLMVAR++TA CH AFFGIGSVVAA LVP + Sbjct: 65 LPRKRALLLLMGIFIVGNVLCAVATNYNFLMVARIITALCHGAFFGIGSVVAASLVPENR 124 Query: 125 RAQAVALMFTGLTVANILGVPLGTAFGHVAGWRATFWAVTGIGALAATMLWTMLPRHLPM 184 +A AVALMFTGLT+AN+LGVPLGTA G VAGW+ FWAV +G L+ LW ++P + Sbjct: 125 KASAVALMFTGLTLANVLGVPLGTALGQVAGWQMPFWAVAVLGVLSLIGLWRVMPVNRHE 184 Query: 185 QGGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLNVTGFSAQEESWVLLLF 244 + ++ E + + + +L T+ L S + F++ TY+A +L +VT S +W L L Sbjct: 185 EKTDLRAEIGQLRNAGLWAALSTTMLFSAATFALFTYVAPLLEDVTHLSPHGVTWTLFLI 244 Query: 245 GAGITVGGLVGGKLADWKLMPVMCAVFLCIAIVLGLFSFTSHYKWPTLATMFAWGAFAFA 304 G G+TVG +GG+LADW+L + +F+ +A+V L +TS P +F W +FA Sbjct: 245 GLGLTVGNYIGGRLADWRLGTALTGIFMVLAVVSSLVRWTSPSLIPVEINLFLWAMVSFA 304 Query: 305 VVPGAQIRVLDTARGAPNLASTLNQGAFNLGNASGAWIGGLAISAGLPLTDLPLIGSVFA 364 VPG Q+ V+ + APNL +TLN GAFN+GNA GAW+GG ISAG L +PL V A Sbjct: 305 AVPGLQVNVMIFGKAAPNLVATLNIGAFNVGNALGAWVGGSVISAGFGLQAVPLAAGVLA 364 Query: 365 LLGLATVAFSASL-DKRVRAPA 385 L + + S L APA Sbjct: 365 LTAVLAMRVSMRLAGDEATAPA 386 >gi|152981427|ref|YP_001351784.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 384 Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 115/380 (30%), Positives = 192/380 (50%), Gaps = 6/380 (1%) Query: 5 LFALAVAAFGIGTTEFVIMGLLPDVAGDLKVSAPAAGMLVSGYALGVAAGAPILAI--LT 62 ++ L + F + T+EF++ G++P + VS G L+S YA+G+ G P+L + L Sbjct: 5 VYILGLTIFSLTTSEFMVAGMMPSLTQAFGVSVTQIGYLISFYAIGMVIGGPVLTVGLLK 64 Query: 63 AKWPRKQALVGLMCLFILGNVLCAMAPNYNFLMVARVVTAFCHAAFFGIGSVVAAELVPP 122 + K+AL+ L+ L+ L + A + +Y+ + AR VT AA FG + E+V Sbjct: 65 LRVSNKKALLCLLLLYALAQAVAAASNSYDIMAGARFVTGVAAAACFGASLAICGEVVAV 124 Query: 123 QKRAQAVALMFTGLTVANILGVPLGTAFGHVAGWRATFWAVTGIGALAATMLWTMLPRHL 182 RA+A +++ GL +AN++GVP T GWRA+FW V + A+ + ++ M+PR Sbjct: 125 GSRARAASIVVGGLMLANVVGVPAATLIDQYWGWRASFWLVVMLVAVCSLLIIFMVPRSH 184 Query: 183 PMQGGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLNVTGFSAQEESWVLL 242 ++ E + + LTS L + F+ +Y A IL VTGF A W+L Sbjct: 185 AAAAPSLDAELAEFKKPALWAAYLTSGLIIGAAFAAFSYFAPILTEVTGFGAAAIPWLLA 244 Query: 243 LFGAGITVGGLVGGKLADWKLMPVMCAVFLCIAIVLGLFSFTSHYKWPTLATMFAWGAFA 302 L+G +G +V G+ AD P++ +A L +F+ + + ++ + G Sbjct: 245 LYGVANVIGNMVIGRYADKYTFPILGWGLAGLATALAVFALFAQNQIISVLALIVVGLIG 304 Query: 303 FAVVPGAQIRVLDTAR-GAPNLASTLNQGAFNLGNASGAWIGGLAISAGLPLTDLPLIGS 361 A+ P R+L A GA L T++ N+G G+W+GGL I+AG L +G Sbjct: 305 VALNPAMISRILKVAHPGA--LVHTMHSSVINMGLGLGSWLGGLGIAAGYGLRSPLWLGF 362 Query: 362 VFALLGLATV-AFSASLDKR 380 A+ GL +V + S+ +R Sbjct: 363 ALAMAGLLSVLPYLKSVPRR 382 >gi|152981201|ref|YP_001353559.1| major facilitator superfamily drug efflux antiporter [Janthinobacterium sp. Marseille] Length = 408 Score = 95.5 bits (236), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 125/242 (51%), Gaps = 1/242 (0%) Query: 2 NWP-LFALAVAAFGIGTTEFVIMGLLPDVAGDLKVSAPAAGMLVSGYALGVAAGAPILAI 60 NW + +LA+ FG+ T EF+ LL +A DL VS AAG V+ AL A A ++ + Sbjct: 29 NWAGITSLALGVFGLVTAEFLPASLLTAMANDLGVSDGAAGQAVTATALVGAGAALMIPV 88 Query: 61 LTAKWPRKQALVGLMCLFILGNVLCAMAPNYNFLMVARVVTAFCHAAFFGIGSVVAAELV 120 LT + RK+ ++ L L +L NVL A A N L+V+RV+ F+ + + +A LV Sbjct: 89 LTRNFDRKRVILTLTILLVLSNVLAATAENLPVLLVSRVLLGIALGGFWSMAAALAMRLV 148 Query: 121 PPQKRAQAVALMFTGLTVANILGVPLGTAFGHVAGWRATFWAVTGIGALAATMLWTMLPR 180 P A+A++ + TG++VA + P+G G + GWR+ F A + + + + +P Sbjct: 149 PDNLFARAMSFILTGVSVATVGAAPIGAYMGDLWGWRSAFIAAGIVSIITLVVQFFAIPS 208 Query: 181 HLPMQGGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLNVTGFSAQEESWV 240 P ++ F + T V+++L L F+ TYI ++ ++T S S V Sbjct: 209 LPPKDNPSLKILFELLRRTNVRVALFAVLLVISGHFAGFTYIRPLMEHITHLSVSAISAV 268 Query: 241 LL 242 LL Sbjct: 269 LL 270 >gi|152981547|ref|YP_001354871.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 417 Score = 79.0 bits (193), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 128/272 (47%), Gaps = 16/272 (5%) Query: 2 NWPLFALAVAAFGIGTTEF----VIMGLLPDVAGDLKVSAPAAGMLVSGYALGVAAGAPI 57 N LF L +A GI T ++M L P + L + G+L+S Y AA + + Sbjct: 12 NERLFLLTIA--GIQFTHILDFMIMMPLGPQLIRVLHIDTHQFGLLLSSYTFTAAASSLL 69 Query: 58 LAILTAKWPRKQALVGLMCLFILGNVLCAMAPNYNFLMVARVVTAFCHAAFFGIGSVVAA 117 A ++ R++ ++ L FI+ + C +APN+ FL++AR + G+ + A Sbjct: 70 AATYIDRFDRRKLMLVLYACFIIATLCCGLAPNFTFLLIARALAGAFGGILGGLVQTMVA 129 Query: 118 ELVPPQKRAQAVALMFTGLTVANILGVPLGTAFGH---VAGWRATFWAVTGIGALAATML 174 +++P ++R +A+ + +++ + GVPLG GWRA F+ + + + + Sbjct: 130 DVIPFERRGKALGTVMAAFSISTVAGVPLGLLLASTFTTLGWRAPFFFIVLLAGIFWVIG 189 Query: 175 WTMLPR---HLPMQG-GNIFQEFRSIIDTRVQLSLLTSTLASISM--FSVITYIAYILLN 228 + +LP HL + GN+FQ ++ L+ + +A I M F+VI YIA + Sbjct: 190 YKLLPNMTAHLHNKPLGNVFQRIFAVAREPRHLTAF-AFIAMIMMAGFTVIPYIALYMTT 248 Query: 229 VTGFSAQEESWVLLLFGAGITVGGLVGGKLAD 260 G + V L GA + G++AD Sbjct: 249 NVGLPESFITVVYLCGGAATFFTSQLIGRMAD 280 >gi|152982589|ref|YP_001352814.1| major facilitator superfamily multidrug resistance B translocase [Janthinobacterium sp. Marseille] Length = 517 Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 4/158 (2%) Query: 26 LPDVAGDLKVSAPAAGMLVSGYALGVAAGAPILAILTAKWPRKQALVGLMCLFILGNVLC 85 +P ++GDL VS +++ +++ A P+ LT + + + +G + LF+L + LC Sbjct: 42 IPAISGDLGVSPQQGTWVITSFSVANAISVPLTGWLTQRIGQVRLFIGSILLFVLASCLC 101 Query: 86 AMAPNYNFLMVARVVTAFCHAAFFGIGSVVAAELVPPQKRAQAVALMFTGLT--VANILG 143 AP+ L+ ARV+ + + PP K A+A F G+T VA I+G Sbjct: 102 GFAPSIEILIAARVLQGAVAGPMIPLSQALLLSSYPPAKSGMALA--FWGMTTLVAPIMG 159 Query: 144 VPLGTAFGHVAGWRATFWAVTGIGALAATMLWTMLPRH 181 LG W F+ IG AA W++ Sbjct: 160 PLLGGWISDNYTWPWIFFINIPIGLFAAWATWSIYKER 197 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 879,057 Number of extensions: 36615 Number of successful extensions: 254 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 13 Length of query: 385 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 300 Effective length of database: 906,776 Effective search space: 272032800 Effective search space used: 272032800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)