BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3164.p
         (285 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981690|ref|YP_001353318.1| hypothetical protein mma_1628 [...   193   9e-51

>gi|152981690|ref|YP_001353318.1| hypothetical protein mma_1628
           [Janthinobacterium sp. Marseille]
          Length = 257

 Score =  193 bits (491), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 141/281 (50%), Positives = 184/281 (65%), Gaps = 29/281 (10%)

Query: 6   VNLLPIFLVGLMGSVHCIGMCGGIVGALSSAA-PARPTPAPTLASALASQAASPLPRVIP 64
           ++L+P F++GL+GS+HC+GMCGGIV A S+A+ P RP PA  +           +P V P
Sbjct: 4   ISLIPFFMLGLLGSLHCVGMCGGIVSAFSAASRPQRPFPAVVVT----------IPTVSP 53

Query: 65  IRIAGSAQVQAFGQDLVRVLGYNLGRLSSYALAGALAGGIAAGLLRGADVLGWLAPAQTL 124
                     A  +D ++VL YN GR+ SYA+AGA+ GGIA G       L  +A  Q  
Sbjct: 54  ----------AVYRDALQVLAYNAGRIGSYAVAGAIVGGIAGG----VHSLSGVAALQVG 99

Query: 125 AYVITNLVLVLLGLYLTQWWTGMSRMEQLGSGLWARLRPHAARLVPVDTPAKALLLGSLW 184
            Y + N +LV+LGLYL   W G++R+EQ G  LW+RLRP    L+P+DT  KA  LG LW
Sbjct: 100 GYWLANGMLVVLGLYLMDAWRGLARLEQAGQFLWSRLRPLMKPLLPMDTVGKAFALGGLW 159

Query: 185 GWLPCGMVYSALLTALMAGSAVQGALTMLAFGTGTLPVLLVAGLSGARLRQLAARPAVRR 244
           GWLPCGMVYS LLTA+ +GSA+ GA  MLAFG GTLP LL  GL G RLR+LA + +VR 
Sbjct: 160 GWLPCGMVYSVLLTAMFSGSALSGASVMLAFGLGTLPALLGLGLLGTRLRELARQRSVRI 219

Query: 245 VAGVIVLAFGILGLLRAAEIGGLGIARGWIDVFCVSPVHGV 285
             G+IVLAFG+LGLLRAA +    ++ GW+D+ C++P  GV
Sbjct: 220 ACGLIVLAFGVLGLLRAAGV----LSNGWLDILCITPQAGV 256


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 542,000
Number of extensions: 18105
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 203
Effective length of database: 917,867
Effective search space: 186327001
Effective search space used: 186327001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)