BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3161.p
         (475 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980038|ref|YP_001353321.1| cb-type cytochrome c oxidase su...   806   0.0  

>gi|152980038|ref|YP_001353321.1| cb-type cytochrome c oxidase
           subunit I [Janthinobacterium sp. Marseille]
          Length = 474

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/470 (83%), Positives = 427/470 (90%), Gaps = 2/470 (0%)

Query: 6   SYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGIPWLSFGRLRPLHTNAVIFA 65
           +YNY VVRQF +AT++WGV+GMLVGV IAAQLAWP LN  I WLS+GRLRPLHTN VIFA
Sbjct: 6   NYNYKVVRQFAIATVVWGVIGMLVGVFIAAQLAWPALNFDIAWLSYGRLRPLHTNGVIFA 65

Query: 66  FGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAITLPMGLTRGKEYAELE 125
           FG C L ATSYYVVQRTCQVRL SD LAAFTFWGWQLV+V A ITLPMG TRGKEYAELE
Sbjct: 66  FGICGLFATSYYVVQRTCQVRLSSDKLAAFTFWGWQLVLVLAVITLPMGWTRGKEYAELE 125

Query: 126 WPITILIAVVWVAYAVVFFGTLIKRKVKHIYVANWFYGAFIIAVAILHIVNGMTMPATLT 185
           WPI ILI +VWVAYAVVFFGTLIKRKV+HIYVANWF+GA+IIAVA+LHIVNG  MPA+L 
Sbjct: 126 WPIAILITIVWVAYAVVFFGTLIKRKVQHIYVANWFFGAYIIAVALLHIVNGAVMPASLG 185

Query: 186 KSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIVHFWAL 245
           KSYS Y+G QDAMIQWWYGHNAVGF LTAG+LGM+YYFIPKQ  RPVYSYRLSIVHFWAL
Sbjct: 186 KSYSAYAGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIVHFWAL 245

Query: 246 IFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTMSGAWHQLRTDPIL 305
           IFTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMINGMMT+SGAWH+LR+DPIL
Sbjct: 246 IFTYMWAGPHHLHYTALPDWTQSIGMVFSLILLAPSWGGMINGMMTLSGAWHKLRSDPIL 305

Query: 306 KFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAMYYLIP 365
           KFL+VSLSFYG++TFEGPMM+IKTVNALSHYTDWTIGHVH+GALGWVGF+TMG++YYLIP
Sbjct: 306 KFLIVSLSFYGIATFEGPMMSIKTVNALSHYTDWTIGHVHAGALGWVGFITMGSIYYLIP 365

Query: 366 RLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNDDGTLTYSFVEGV 425
           RLSGK QMWS +LIE+HFWVATIGIVLYIA+MWIAGVMQGLMWRAVN DGTLTY+FVE V
Sbjct: 366 RLSGKKQMWSTNLIELHFWVATIGIVLYIASMWIAGVMQGLMWRAVNPDGTLTYTFVESV 425

Query: 426 KATYPYYVIRLVGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH 475
           KATYPYYVIR  GG +YL GML+MAYNT+ TMR  E   A IPAV  AAH
Sbjct: 426 KATYPYYVIRFTGGALYLGGMLLMAYNTFMTMRDGEAVAARIPAV--AAH 473


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.139    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,150,804
Number of extensions: 49130
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 2
Length of query: 475
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 388
Effective length of database: 899,382
Effective search space: 348960216
Effective search space used: 348960216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)