BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3160.p
         (204 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979783|ref|YP_001353322.1| cb-type cytochrome c oxidase su...   360   e-101

>gi|152979783|ref|YP_001353322.1| cb-type cytochrome c oxidase
           subunit II [Janthinobacterium sp. Marseille]
          Length = 204

 Score =  360 bits (924), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/204 (83%), Positives = 182/204 (89%)

Query: 1   MKFSHEWIEKNPWLLIGLVLLVVSVGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDI 60
           MKFSHEWIEKNPWLLI LV LVVSVGG  EIVPLFFQKSTTEP+AGLKPYSALRLAGRD+
Sbjct: 1   MKFSHEWIEKNPWLLIALVTLVVSVGGAVEIVPLFFQKSTTEPVAGLKPYSALRLAGRDV 60

Query: 61  YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGNRYSDE 120
           Y REGCYNCHSQMIRP RAETERYGHYSVAGE VYD PFQWGSKRTGPDLARVG RYSDE
Sbjct: 61  YTREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGGRYSDE 120

Query: 121 WHRAHLHNPRDVVPESNMPAYPWLEQTKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL 180
           WHR HL  PRD+VPESNMP YPWL +TKL   DI+ RM+AL+R+G PYT+E+IK APAEL
Sbjct: 121 WHRTHLDRPRDLVPESNMPGYPWLVKTKLVPNDIMPRMRALQRLGVPYTDEEIKAAPAEL 180

Query: 181 VGKTEQDALIAYLQGLGILIKAER 204
            GKTEQDAL+AYLQGLGILIKA R
Sbjct: 181 DGKTEQDALVAYLQGLGILIKARR 204


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 468,926
Number of extensions: 18606
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 125
Effective length of database: 928,958
Effective search space: 116119750
Effective search space used: 116119750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)