BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3157.p
         (495 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981162|ref|YP_001353325.1| 4Fe-4S ferredoxin, iron sulfur ...   691   0.0  

>gi|152981162|ref|YP_001353325.1| 4Fe-4S ferredoxin, iron sulfur
           binding [Janthinobacterium sp. Marseille]
          Length = 466

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/466 (69%), Positives = 383/466 (82%), Gaps = 1/466 (0%)

Query: 29  KDGKDEYAVIRMYAAREQIYPREIQGRFASLRWLCVFLTQLVFYGLPWINWNERQAVLFD 88
           K+ K E +VI+MYAARE+IYPRE +GR+ASLRWLCV+LTQL FYGLPW++WN RQA+LFD
Sbjct: 2   KNSKPEVSVIKMYAAREEIYPRETKGRYASLRWLCVWLTQLAFYGLPWLSWNGRQALLFD 61

Query: 89  LASRKFYLFGLVLWPQDFIWLAALLIICAFSLFLFTAIAGRVWCGYSCPQTVYTEIFLWI 148
           LA+RKFY+FG+VLWPQDFI+LAALLIICA+ LFL TAIAGRVWCG+SCPQTVYTEIFLWI
Sbjct: 62  LAARKFYIFGIVLWPQDFIYLAALLIICAYLLFLATAIAGRVWCGFSCPQTVYTEIFLWI 121

Query: 149 ERRIEGNRSARMRLDRQPWSFDKLWRKSAKHLAWGSLALWTGISFVGYFSPIRGLLPEIG 208
           ER IEG RSARMRLD+QP SF KL +K+AKH+AWG++ALWTG +FVGYF+PIR L  ++ 
Sbjct: 122 ERVIEGKRSARMRLDKQPASFAKLAKKTAKHMAWGAVALWTGFTFVGYFTPIRELALQVV 181

Query: 209 TFALGPWESFWIVFYGFATYGNAGWMREQVCKYMCPYARFQSAMFDRDSLIITYDAARGE 268
              LGPW+ FW++FY FATYGNAGW+REQVCKYMCPYARFQS+MFD+DSLII+YD  RGE
Sbjct: 182 ALTLGPWQMFWVLFYSFATYGNAGWLREQVCKYMCPYARFQSSMFDKDSLIISYDRKRGE 241

Query: 269 PRMPAAKAAKLQAGAKSGDCIDCTMCVQVCPTGIDIRQGLQYMCIGCAACVDACDSVMDK 328
           PR  + K +   AG   G CIDC+MCVQVCP GIDIR GLQY CIGCAACVDAC+SVMDK
Sbjct: 242 PRGMSNKHSA-AAGLSFGACIDCSMCVQVCPVGIDIRDGLQYECIGCAACVDACNSVMDK 300

Query: 329 IERPRGLIRYSTENAIEQGFSTPEIRRRVLRPRILIYTAILGAVICVFLGSLVVRTPLKL 388
           I   RGL+RY+T+NA+    S  E+RRR LRPR+LIY AIL A+I VF  +L +RTPLKL
Sbjct: 301 IGSARGLVRYTTDNALANNLSVKEVRRRALRPRVLIYGAILAAIIIVFFTALTMRTPLKL 360

Query: 389 DVIRDRGSMGREVEDGIIENVYRLQVINTDERGHRYRISASGIDGLTVDPSDPIELAATQ 448
           DVIRDRG+MGREVEDG+IENVYRLQ++NT E+ H+Y+IS SGI+ L +   D + L  T+
Sbjct: 361 DVIRDRGAMGREVEDGMIENVYRLQIMNTSEQAHQYKISVSGIESLELATPDEVRLQGTE 420

Query: 449 TLMVPVRVRAPHGAGEVGSNKIHIALQAEDQPALQVSEKAVFLVPR 494
           T  VPVRVR   G GE GSN+I  +LQA D   L V+E AVF VPR
Sbjct: 421 TRAVPVRVRVAAGHGEPGSNEISFSLQALDDAGLHVTEHAVFFVPR 466


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.140    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,091,462
Number of extensions: 43326
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 408
Effective length of database: 899,382
Effective search space: 366947856
Effective search space used: 366947856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)