BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3156.p
         (180 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981811|ref|YP_001353326.1| hypothetical protein mma_1636 [...   155   1e-39

>gi|152981811|ref|YP_001353326.1| hypothetical protein mma_1636
           [Janthinobacterium sp. Marseille]
          Length = 179

 Score =  155 bits (392), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 102/163 (62%), Gaps = 5/163 (3%)

Query: 13  PWYRHRWPWLLMSGP-AVVVAGIFTAWLAISRADALVADDYYKQGKAINKDLRRDHEAQR 71
           PWY+HRWPWLLM GP  VV+AGIFT W+A+++ DALV DDYYKQGKAIN+DLRRD  A  
Sbjct: 16  PWYKHRWPWLLMLGPFTVVIAGIFTIWIAVTQQDALVVDDYYKQGKAINQDLRRDRVASN 75

Query: 72  LGASIGIAYDPAAAVLRGRLQMRQTPAAGEEGRTLILNLVHPTQPAKDRTLMVQTAADGS 131
           LG      YD     L G +      A G+    + L L+H T P KD +L  +  A G 
Sbjct: 76  LGMHFSAYYDTDQQKLIGNVSSDARQAIGD----ISLRLIHATLPEKDISLSAKADAGGR 131

Query: 132 FSLSLPEMEQARWRLVAEDGSHLWRLHGNWAWPQQRSIEMNAE 174
           F +SLPE+   RW++  E+    WRL G W WP Q+++ ++A+
Sbjct: 132 FEISLPELTSGRWQVWIENRQRDWRLGGVWLWPAQKNLILDAD 174


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.131    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 458,379
Number of extensions: 17924
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 103
Effective length of database: 936,352
Effective search space: 96444256
Effective search space used: 96444256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)