BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3154.p
         (285 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981650|ref|YP_001353329.1| Crp/FNR family transcriptional ...   381   e-107

>gi|152981650|ref|YP_001353329.1| Crp/FNR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 252

 Score =  381 bits (979), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/253 (73%), Positives = 216/253 (85%), Gaps = 3/253 (1%)

Query: 20  MTQCSPLTSAREAAASSALR-SCTACGMHQLCLPMGLDESDMKRLDKIIGRR-KVARDDF 77
           M+Q SP T+   A + +ALR SC+ C MHQLCLPMGL E+DM RLDKIIGRR KVARDD+
Sbjct: 1   MSQASPSTTD-PALSVNALRASCSTCSMHQLCLPMGLGENDMDRLDKIIGRRRKVARDDY 59

Query: 78  LYRIGDRFTALYAVRVGHFKTYQENLDGDRQITGFQMPGELLGMDAISTEHHQCDAVALQ 137
           LYR+GD FT LYAVRVGHFKT Q N  G++QITGFQM GELLGMDAIST+ H C+AVAL+
Sbjct: 60  LYRMGDAFTNLYAVRVGHFKTCQINAGGEQQITGFQMTGELLGMDAISTDRHHCNAVALE 119

Query: 138 DSEVCEIPFARLEQLFGQIPHLLRHFHRMMSHEITSEQNVIMLLGNMRAEQRFAAFLVNL 197
           DSEVCEIPF RLE+LFG +P LLRHFHRMMS EIT EQ+V++LLGNMRAEQRFAAFLVNL
Sbjct: 120 DSEVCEIPFPRLEELFGTMPTLLRHFHRMMSQEITREQSVMLLLGNMRAEQRFAAFLVNL 179

Query: 198 SSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVIDLP 257
           +SRY ARGYSST FQLRM+R+D+GNYLGLTIESISRL+SKF+KQGLL V  R++E++DL 
Sbjct: 180 ASRYMARGYSSTSFQLRMSREDIGNYLGLTIESISRLLSKFKKQGLLKVNNREIELLDLT 239

Query: 258 ALKRLAAGVDACN 270
            LK +AAG + C+
Sbjct: 240 LLKAMAAGTETCS 252


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 489,761
Number of extensions: 17828
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 203
Effective length of database: 917,867
Effective search space: 186327001
Effective search space used: 186327001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)