BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3152.p
         (208 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981449|ref|YP_001352915.1| outer membrane protein W [Janth...   281   2e-77

>gi|152981449|ref|YP_001352915.1| outer membrane protein W
           [Janthinobacterium sp. Marseille]
          Length = 206

 Score =  281 bits (720), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 140/201 (69%), Positives = 160/201 (79%), Gaps = 3/201 (1%)

Query: 10  AVAALASSFAAAPVFAQEAQS-PWLVRVRAVNLSPENKSDQVGGVGASDRLTINNKVIPE 68
           A+A  + +  ++  FAQ+ Q   WLVRVRAVNL P NKSD +GGVGASDRLTIN+KVIPE
Sbjct: 7   AIALCSLAALSSQAFAQQTQEGSWLVRVRAVNLDPANKSDPIGGVGASDRLTINSKVIPE 66

Query: 69  FDISYFFTPNIATELILTYPQKQDVRLDGNKIGSFKHLPPTLTVQYHFMPEAAFSPYVGA 128
            DISYFFTPN ATEL+LTYPQKQ V LDG +IG+FKHLPPTLT+QYHF PE   SPYVGA
Sbjct: 67  LDISYFFTPNWATELVLTYPQKQKVSLDGTQIGTFKHLPPTLTLQYHFTPEKTISPYVGA 126

Query: 129 GINYTRISSVS-LPGGLQLDSSSVGGALQFGADYKINKNWLINFDVKKVQISSDVKDATG 187
           GINYTRISSV  L G   L+ SSVG ALQ G D+KI+KNW IN DVKKVQI SDV  A G
Sbjct: 127 GINYTRISSVDLLNGAATLEKSSVGLALQAGVDFKIDKNWSINLDVKKVQIRSDVNTAAG 186

Query: 188 TKISNVKIDPWLIGIGVGYRF 208
            ++S VK+DPWL+G+GVGYRF
Sbjct: 187 -QLSAVKVDPWLVGVGVGYRF 206


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 459,886
Number of extensions: 18080
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 208
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 129
Effective length of database: 928,958
Effective search space: 119835582
Effective search space used: 119835582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)