BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3150.p
         (153 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980927|ref|YP_001351836.1| Lpr family transcriptional regu...    97   4e-22
gi|152981798|ref|YP_001355132.1| auxin efflux carrier [Janthinob...    86   1e-18
gi|152981736|ref|YP_001352356.1| AsnC family transcriptional reg...    77   7e-16

>gi|152980927|ref|YP_001351836.1| Lpr family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 155

 Score = 97.4 bits (241), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 81/143 (56%)

Query: 3   LDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMDEGYVKEVRAILDPEKLG 62
            DR D+ +L+ LQ  GR  N EL++++ +S   C+   +RL  EG ++   A +D   +G
Sbjct: 4   FDRYDRILLETLQSKGRASNVELSERVNLSPPQCYRRVQRLEQEGVIRGYSAQVDAAAIG 63

Query: 63  LPVLVTVGVVLDRSTPESFAEFEKAVREIAAVQECLLLAGEFDYWIKLRVKDLQAFNRLH 122
           L V   V + + R   +   E EKA+R+   + EC  ++G+FDY +K+   DL++ +   
Sbjct: 64  LGVTAFVNLNIAREQFKQVRELEKAIRQFPEILECYTISGDFDYLLKVVAVDLKSLSSFL 123

Query: 123 ANTLLRLPGVRQLRSFFVLNEVK 145
            + L+++PGV  +RS   L E+K
Sbjct: 124 TDRLMQVPGVAGVRSMVCLEEIK 146


>gi|152981798|ref|YP_001355132.1| auxin efflux carrier
           [Janthinobacterium sp. Marseille]
          Length = 157

 Score = 85.9 bits (211), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 76/145 (52%)

Query: 1   MSLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMDEGYVKEVRAILDPEK 60
           + LD +D+RIL ALQ D    N +LA  +  S   C    KRL+D G ++   AI+ P+ 
Sbjct: 6   LDLDELDRRILNALQMDASQTNNDLAAAVHASPPTCLRRVKRLIDAGVIERQVAIVAPQM 65

Query: 61  LGLPVLVTVGVVLDRSTPESFAEFEKAVREIAAVQECLLLAGEFDYWIKLRVKDLQAFNR 120
           +G  +   V + LD+   E   EFE  V + +AV +C  ++   D+ + ++V D+ A++ 
Sbjct: 66  VGAGLTSIVEITLDKQADEQQVEFEALVAQESAVLQCYRVSPGPDFVLVVQVADMPAYHV 125

Query: 121 LHANTLLRLPGVRQLRSFFVLNEVK 145
           L          VR +RSFF +N  K
Sbjct: 126 LAHRLFATHANVRNVRSFFSINRSK 150


>gi|152981736|ref|YP_001352356.1| AsnC family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 169

 Score = 76.6 bits (187), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 77/152 (50%)

Query: 2   SLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMDEGYVKEVRAILDPEKL 61
           +LD++D+++L  LQKD +     LA K+ +S   C    + + D G +    A++DP  L
Sbjct: 6   TLDKVDRKLLNLLQKDNQTPTRTLADKVHISQPTCLRRIRDMRDAGIISADVAMIDPFAL 65

Query: 62  GLPVLVTVGVVLDRSTPESFAEFEKAVREIAAVQECLLLAGEFDYWIKLRVKDLQAFNRL 121
           G  +L  + V L   + E   EFE  + + A V +C  ++G++DY++ + V D+ A+ + 
Sbjct: 66  GYGMLAFLEVSLGNQSDEHMQEFEVRMGKEAEVMQCYFVSGDYDYFLVVHVVDMDAYYQF 125

Query: 122 HANTLLRLPGVRQLRSFFVLNEVKNNPELVVE 153
               +     VR  +S F +   K +  +  +
Sbjct: 126 VRRAISGSGNVRHFQSRFPMKRAKFDTRIAFD 157


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 295,090
Number of extensions: 9154
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 77
Effective length of database: 940,049
Effective search space: 72383773
Effective search space used: 72383773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)