BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3147.p
         (396 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979788|ref|YP_001352813.1| multidrug resistance protein A,...   168   5e-43
gi|152980920|ref|YP_001353621.1| hypothetical protein mma_1931 [...    97   1e-21

>gi|152979788|ref|YP_001352813.1| multidrug resistance protein A,
           emrA [Janthinobacterium sp. Marseille]
          Length = 399

 Score =  168 bits (426), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 184/354 (51%), Gaps = 38/354 (10%)

Query: 52  VAWVLYYQFRGKYLESTNDAFVQADSVTVSSKVTGYVDQVMVADNQVVKAGQPLVRIDAR 111
           V W +Y     ++ E T+DA+V  + V V+ +V G V  +   D ++V+AG+PLV +D  
Sbjct: 39  VWWAIY----ARHFEDTDDAYVAGNVVQVTPQVGGTVIAIHADDTELVEAGKPLVDLDHS 94

Query: 112 DYSAQAAQAKAQIDAAAASEEAATAQLAEQQAAIDQAKAQLAAAQDDDRFATAEVERYTP 171
           D      QA+AQ+                  AA+ Q  A +A A+DD       + R   
Sbjct: 95  DAKVALDQAEAQLAQTVREVRTLFVNNGALGAAVTQRVADVARARDD-------LARRQE 147

Query: 172 LAASGAETRERLTTLRNQQAQARSTLAARRAALEAAQLRVRSLQA--------QVRQAQA 223
           L+ +GA  +E L         AR+TL A  +AL+AA+ ++ S QA        Q    Q 
Sbjct: 148 LSGTGAVAKEDLE-------HARTTLIAAESALQAARDQLTSNQALTDGTTVAQHPNVQR 200

Query: 224 QGETAKAQYDAASVNLGYTEIRASVDGRIGDKQVRVGQFVSAGTRLMTVVPTR-FYVNAN 282
                +A Y A S N     + A + G I  + V+VGQ V+ GT L++VVP    +V+AN
Sbjct: 201 AAAQVQAAYLALSRN----TLLAPITGYIAKRSVQVGQRVAPGTPLLSVVPLNALWVDAN 256

Query: 283 FKETQIGIMRIGQPATIKVDAL-PGVEFRGHVESLSPGTGAQFSLLPPQNATGNFTKIVQ 341
           FKE Q+  MRIGQP  +  D    GV++ G V  LS GTGA F+LLP QNA+GN+ K+VQ
Sbjct: 257 FKEVQVAKMRIGQPVELYSDVYGSGVKYHGKVAGLSAGTGAAFALLPTQNASGNWIKVVQ 316

Query: 342 RVPVRVAIDATPEQTRAFVAGLSVTVEVNTIGAKDELRTLRERNSETNATGTEP 395
           R+PVR+ +D    + R    GLS+ VEV+   AK E  +L    + T A   EP
Sbjct: 317 RIPVRITLDPKELEERPLRVGLSMQVEVDV--AKSEGTSL----TSTTAPRAEP 364


>gi|152980920|ref|YP_001353621.1| hypothetical protein mma_1931
           [Janthinobacterium sp. Marseille]
          Length = 289

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 153/354 (43%), Gaps = 86/354 (24%)

Query: 31  RMSPRARFVLRALGLLVLVIVVAWVLYYQFRGKYLESTN-------DAFVQADSVTVSSK 83
           R S   R+++  + LL+ +++          GKYL   N       D  V+AD + ++  
Sbjct: 2   RTSAYLRYIITGVFLLLAILL----------GKYLWDDNMYSPWTRDGRVKADILHIAPD 51

Query: 84  VTGYVDQVMVADNQVVKAGQPLVRIDARDYSAQAAQAKAQIDAAAASEEAATAQLAEQQA 143
           V+G V  V V DNQ V  G  L  ID   Y+                             
Sbjct: 52  VSGIVTNVAVRDNQFVHKGDILFSIDKSRYAH---------------------------- 83

Query: 144 AIDQAKAQLAAAQDDDRFATAEVERYTPLAASGAETRERLTTLRNQQAQARSTLAARRAA 203
            + QA+A LAA Q +    + E  R + L AS       + T  N++A A          
Sbjct: 84  VLTQAEATLAAQQAEKGMRSKEAARRSTLDAS-------IVTSENREAAA---------- 126

Query: 204 LEAAQLRVRSLQAQVRQAQAQGETAKAQYDAASVNLGYTEIRASVDGRIGDKQVRVGQFV 263
                    SL +           A+   D A +NL  T++RA VDG + +  V  G F 
Sbjct: 127 ---------SLSSIAGAKYQAAAAAR---DTAQLNLERTDVRAPVDGYVTNLHVYAGDFA 174

Query: 264 SAGTRLMTVVPTR-FYVNANFKETQIGIMRIGQPATIKVDALPGVEFRGHVESLSPG--- 319
           +AG   + V+ +  +YV+  F+ET++  +++     I++ +  G   +GH+ES+S G   
Sbjct: 175 TAGVPQLAVIDSNSYYVSGYFEETKLPYLKVNDKVEIRLMS-GGPALQGHIESISRGITD 233

Query: 320 ----TGAQFSLLPPQNATGNFTKIVQRVPVRVAIDATPEQTRAFVAGLSVTVEV 369
               TG +  LL   N T N+ ++ QRVPVR+ ID   ++    VAG++ TV V
Sbjct: 234 RDASTGRE--LLADINPTFNWVRLAQRVPVRIRIDEL-DKNHQLVAGMTCTVIV 284


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.125    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 602,551
Number of extensions: 19878
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 4
Length of query: 396
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 311
Effective length of database: 906,776
Effective search space: 282007336
Effective search space used: 282007336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)