BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3146.p (522 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982589|ref|YP_001352814.1| major facilitator superfamily m... 206 2e-54 gi|152982526|ref|YP_001355122.1| major facilitator superfamily d... 123 3e-29 gi|152980367|ref|YP_001352036.1| major facilitator superfamily d... 116 3e-27 gi|152982562|ref|YP_001352191.1| major facilitator superfamily d... 76 4e-15 gi|152982183|ref|YP_001354785.1| major facilitator transporter [... 75 1e-14 >gi|152982589|ref|YP_001352814.1| major facilitator superfamily multidrug resistance B translocase [Janthinobacterium sp. Marseille] Length = 517 Score = 206 bits (525), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/475 (27%), Positives = 249/475 (52%), Gaps = 7/475 (1%) Query: 31 TLGALMATLDISIVNSSLPTIQGEIGASGTEGTWIATAYLVAEIVIIPMSAWLERLLGLR 90 +L M LD SI N S+P I G++G S +GTW+ T++ VA + +P++ WL + +G Sbjct: 25 SLAVFMNVLDSSIANVSIPAISGDLGVSPQQGTWVITSFSVANAISVPLTGWLTQRIGQV 84 Query: 91 VLLLTAASLFTLFSVLCGLSTTLPMMIIGRVGQGFTGGALIPTAMTIIATRLPRSQQPVG 150 L + + LF L S LCG + ++ ++I RV QG G +IP + ++ + P ++ + Sbjct: 85 RLFIGSILLFVLASCLCGFAPSIEILIAARVLQGAVAGPMIPLSQALLLSSYPPAKSGMA 144 Query: 151 NAMFGATAILGPVLGPVMGGWLTENVSWHYAFFINLPVG--AALITLLLVAIPYERPKFE 208 A +G T ++ P++GP++GGW+++N +W + FFIN+P+G AA T +I ER Sbjct: 145 LAFWGMTTLVAPIMGPLLGGWISDNYTWPWIFFINIPIGLFAAWATW---SIYKERESRT 201 Query: 209 QLAQADWFGIAGLALGLGGLTVVLEEGEREQWFSSPDIRWLAATSLLGFILLAIGQMRSR 268 D G+ L L +G L ++L++G+ WF S +I LA+ +++ FI I ++ Sbjct: 202 YKLPIDKVGLVLLVLWVGSLQLMLDKGKELDWFHSGEIIILASVAVVAFIYFVIWEIGEE 261 Query: 269 HPVIQLRLLRDRQF-GSVVMMAMIVGVALYGTAYVIPQFLSGIAGYNSLQSGWIVLLSGV 327 HPV+ L L + R F G V+ +++ G+ +G+ ++P +L GY + ++G ++ G+ Sbjct: 262 HPVVDLSLFKGRNFSGGVIAISVAYGL-FFGSLVILPLWLQTQIGYTATEAGKVMAPVGI 320 Query: 328 PMILMMPFTPLLMRRVDIRIAVGTGFLLLATSAFLETDLSPLSYGGSFVASQLMRGLGTV 387 I++ P ++ ++D R T FL+ + F+ + + + + +++G Sbjct: 321 FAIILSPIVGKMLPKIDARWVATTAFLIFSLVFFMRSQFTQDVDMMTLMIPTVIQGAAMA 380 Query: 388 LAMLFLNQAAIRSVPPAQAGDASGLYSAARNLGGSLALAAIAVIQDQRLWLHSRRLEESL 447 + + L + P + A+GL + R + G + + ++ + D R LH +L E Sbjct: 381 MFFIPLTSIILSGQAPDKIPAAAGLSNFVRIMFGGIGTSVMSTMWDNRTILHHAQLAEYT 440 Query: 448 SANSDLVQSSIAAQAHLLGGQDVAIQLMGATIQAQALTMTYADLFWLLGVAIVCV 502 A++ +++A + A ++ + QA T+ DLFW+ + +C+ Sbjct: 441 GAHNPAFGQAVSALMSRGMSEQAAWAVIDRQMTVQASTLAATDLFWMSAIMFLCL 495 >gi|152982526|ref|YP_001355122.1| major facilitator superfamily drug efflux transporter [Janthinobacterium sp. Marseille] Length = 481 Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 108/430 (25%), Positives = 197/430 (45%), Gaps = 11/430 (2%) Query: 15 QEEKADAAAWLAVAAGTLGALMATLDISIVNSSLPTIQGEIGASGTEGTWIATAYLVAEI 74 ++ WL + +G++ A L +IVN ++P + W++T +++A Sbjct: 10 RDRYGARYKWLVLLTCMIGSVAAILSSTIVNVAIPDLSRYFVLGQERAQWVSTGFMLAMT 69 Query: 75 VIIPMSAWLERLLGLRVLLLTAASLFTLFSVLCGLSTTLPMMIIGRVGQGFTGGALIPTA 134 + + ++ WL GLR A L + V+ G S PM++ RV +G G + P Sbjct: 70 LSMLLTPWLLLRFGLRRTYGGAICLLLIGGVVGGFSINYPMLLSMRVLEGLASGVMQPIP 129 Query: 135 MTIIATRLPRSQQPVGNAMFGATAILGPVLGPVMGGWLTENVSWHYAFFINLPVGAALIT 194 +I + +Q +FG +L P +GP +GG+L E W FF+ +P ++ Sbjct: 130 AIVILRAFDQHEQGKAMGIFGFGVVLAPAVGPSVGGFLVELFGWRSIFFVVVPPCLVVLV 189 Query: 195 LLLVAIPYERPKFEQLAQADWFGIAGLALGLGGLTVVLEEGEREQWFSSPD---IRWLAA 251 L+ + P + DW G+ L +G V L G E P + + Sbjct: 190 LIQRFLASYTPVPDSDKPLDWKGL----LLIGVSIVSLLNGVVELRGDMPQAVVLLVIGV 245 Query: 252 TSLLGFILLAIGQMR-SRHPVIQLRLLRDRQFGSVVMMAMIVGVALYGTAYVIPQFLSGI 310 +L+GFIL Q R S P++ ++L R RQF ++A I G+ L+G+ Y++P ++ Sbjct: 246 ATLIGFILY---QTRTSAEPLMNMQLFRHRQFAMGALVAFIYGMGLFGSTYLLPIYMQMG 302 Query: 311 AGYNSLQSGWIVLLSGVPMILMMPFTPLLMRRVDIRIAVGTGFLLLATSAFLETDLSPLS 370 Y Q+G ++L +G+ + + +P L R + V G LLA S L + SP + Sbjct: 303 MNYAPSQAGLVLLPAGIVLAVTIPLAGRLADRYPPNVLVAIGLFLLAASFALMANGSPAT 362 Query: 371 YGGSFVASQLMRGLGTVLAMLFLNQAAIRSVPPAQAGDASGLYSAARNLGGSLALAAIAV 430 + +A ++ +G + L+ A+R + + + R LGG++ ++ + V Sbjct: 363 SYLALMAWAVIGRIGLGFVLPALSLGAMRGLDIGLVAQGASAINFVRQLGGAIGVSLVGV 422 Query: 431 IQDQRLWLHS 440 + + R+ LH Sbjct: 423 VLEWRIALHQ 432 >gi|152980367|ref|YP_001352036.1| major facilitator superfamily drug efflux transporter [Janthinobacterium sp. Marseille] Length = 478 Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 130/250 (52%), Gaps = 7/250 (2%) Query: 35 LMATLDISIVNSSLPTIQGEIGASGTEGTWIATAYLVAEIVIIPMSAWLERLLGLRVLLL 94 M LD +I+N+++P++ + + + ++Y++A V IP+S W+ G R + Sbjct: 29 FMEQLDSTIINTAIPSMAASLHVTPLSLKAVVSSYILALAVSIPISGWMADRFGTRRVFS 88 Query: 95 TAASLFTLFSVLCGLSTTLPMMIIGRVGQGFTGGALIPTAMTIIATRLPRSQQPVGNAMF 154 A LFT S+LCGLS +PM++ R+ QGF+ ++P + P+S+ Sbjct: 89 VAVGLFTFSSILCGLSVNVPMLVAARILQGFSAAMMMPVGRLTVIRTFPKSELLAAMNFV 148 Query: 155 GATAILGPVLGPVMGGWLTENVSWHYAFFINLPVGAALITLLLVAIPYERPKFEQLAQAD 214 A++GP+LGP +GG + + W FF+N+P+G A ++ +P R + D Sbjct: 149 IIPALIGPLLGPTVGGLIVHWLPWQAIFFVNVPIGLAAQWMIHRHMPDYRSDSPR--PLD 206 Query: 215 WFGIAGLALGLGGLTVVLE-EGEREQWFSSPDIRWLAATSLLG-FILLAIGQMRSRHPVI 272 G+ G+ L+ +LE GE +S I ++ + +LLG +IL A R+ HP++ Sbjct: 207 VIGLVLFGSGVALLSWILEIFGEHYLDATSTTILFIISLALLGAYILHA---RRTLHPLL 263 Query: 273 QLRLLRDRQF 282 QL L + R F Sbjct: 264 QLTLFKTRTF 273 >gi|152982562|ref|YP_001352191.1| major facilitator superfamily drug efflux transporter [Janthinobacterium sp. Marseille] Length = 518 Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 80/305 (26%), Positives = 136/305 (44%), Gaps = 12/305 (3%) Query: 24 WLAVAAGTLGALMATLDISIVNSSLPTIQGEIGASGTEGTWIATAYLVAEIVIIPMSAWL 83 WL +A ++ L+ +D++++ ++LP + ++ AS + WI Y + ++ L Sbjct: 21 WLVLAIVSVALLLIVVDMTVLYAALPRLTADLTASASAKLWIVNIYALTVSGLLLGMGTL 80 Query: 84 ERLLGLRVLLLTAASLFTLFSVLCGLSTTLPMMIIGRVGQGFTGGALIPTAMTIIATRL- 142 LG + L + +F + S+ S + +I R ++P ++II Sbjct: 81 GDRLGHKSLFIAGLVVFGIASLCAAYSPSSATLIASRALLAVGAAMMMPATLSIIRLAFA 140 Query: 143 PRSQQPVGNAMFGATAILGPVLGPVMGGWLTENVSWHYAFFINLPVGAALITLLLVAIPY 202 +++ V ++ + A G LGPV+GG L E W F IN+P+ + + L IP Sbjct: 141 DENERAVAIGIWASVAFGGAALGPVVGGLLLEYFWWGSVFLINVPIVLVALPIALAYIP- 199 Query: 203 ERPKFEQLAQADWFGIAGLALGLGGLTVVLEE-GEREQWFSSPDIRWLAATSLLGFILLA 261 + K + D G + GL G+T L+E G+RE P L+G LA Sbjct: 200 -KGKANKTRPWDLIGSLQIMAGLVGVTYALKEAGKRE-----PAWGIALLVLLVGIFFLA 253 Query: 262 I---GQMRSRHPVIQLRLLRDRQFGSVVMMAMIVGVALYGTAYVIPQFLSGIAGYNSLQS 318 + Q S HP+I L ++ F S V A++ AL G V Q L + LQ+ Sbjct: 254 VFARRQQHSAHPMIDFSLFKNTIFSSSVAAAVVAAAALLGMELVFTQRLQLVLDMTPLQA 313 Query: 319 GWIVL 323 G +L Sbjct: 314 GVFIL 318 >gi|152982183|ref|YP_001354785.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 469 Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 99/420 (23%), Positives = 178/420 (42%), Gaps = 22/420 (5%) Query: 26 AVAAGTLGALMATLDISIVNSSLPTIQGEIGASGTEGTWIATAYLVAEIVIIPMSAWLER 85 A+ + +G MA+LD +I N++LP + ++ A+ + WI Y +A + + A L Sbjct: 32 AIVSVAIGVGMASLDTAIANTALPAMAMQLNATPADSVWIVNIYQLAMVATLLPFAALGE 91 Query: 86 LLGLRVLLLTAASLFTLFSVLCGLSTTLPMMIIGRVGQGFTGGALIPTAMTIIATRLPRS 145 +LG R + + LFT S+ C + +LP ++I R QG A++ ++ + P Sbjct: 92 ILGYRRIAIFGLLLFTAASLACAYAWSLPTLVIARFFQGVGASAIMGVNTALLRSIYPAR 151 Query: 146 QQPVGNAMFGATAILGPVLGPVMGGWLTENVSWHYAFFINLPVGAALITLLLVAIPYER- 204 G + +GP + SW + F IN+P+G L +P+ + Sbjct: 152 MLGRGLGTNALVVAVAFAVGPTTASLILSVWSWPWLFAINVPLGLFAYFLARKVLPHTKR 211 Query: 205 --PKFEQLA---QADWFGIAGLALGLGGLTVVLEEGEREQWFSSPDIRWLAATSLLGFIL 259 KF+ L A FG+ LA+G EG + + A L+ FIL Sbjct: 212 ATHKFDALTAIYNAGGFGLLILAIG---------EGAHLSDAKTVALELFGA--LVFFIL 260 Query: 260 LAIGQMRSRHPVIQLRLLRDRQFGSVVMMAMIVGVALYGTAYV-IPQFLSGIAGYNSLQS 318 L Q P++ + L R R ++ + + A A+V +P + + G +++++ Sbjct: 261 LLRRQKGHAAPMLPVDLFR-RPLFTLSALTAVCTFAAQSLAFVSLPFYFETVLGRSAIET 319 Query: 319 GWIVLLSGVPMILMMPFTPLLMRRVDIRIAVGTGFLLLATSAFLETDLSPLSYGGSFVAS 378 G+++ V + +M P L + G G +L+ +SP Sbjct: 320 GFLITPWAVMVGIMAPIAGRLSDHYPPGMLGGVGLSVLSAGMVSLILMSPDVSVFGICWR 379 Query: 379 QLMRGLGTVLAMLFLNQAAIRSVPPAQAGDASGLYSAARNLG---GSLALAAIAVIQDQR 435 + G+G +A + S PP + G ASG+ + +R LG G+ +A +I Q Sbjct: 380 MALCGIGFGFFQAPNLRAIMSSAPPERGGSASGVVATSRLLGQASGAALVAFCFIISTQH 439 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,126,677 Number of extensions: 44000 Number of successful extensions: 280 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 265 Number of HSP's successfully gapped: 9 Length of query: 522 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 434 Effective length of database: 895,685 Effective search space: 388727290 Effective search space used: 388727290 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 132 (55.5 bits)