BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3143.p (1261 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982347|ref|YP_001354166.1| hemagglutinin-related protein [... 292 7e-80 gi|152981932|ref|YP_001354165.1| autotransporter [Janthinobacter... 287 3e-78 gi|152981607|ref|YP_001352211.1| outer membrane autotransporter ... 64 5e-11 >gi|152982347|ref|YP_001354166.1| hemagglutinin-related protein [Janthinobacterium sp. Marseille] Length = 857 Score = 292 bits (748), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 225/371 (60%), Gaps = 12/371 (3%) Query: 893 AATPVAPVLDRQIQHPSSGDMAQVVTALGRLPDAASLMRAASQTLPRNDSASAIRGSQAS 952 +A A VLD Q+ + +GDM V+ A G+LPD ++ RAA+QTLP AI G+ + Sbjct: 497 SALDAARVLDTQLNNGVTGDMGNVINAFGQLPDNRAVARAATQTLPLASGHQAILGTLGT 556 Query: 953 LNRVIATRVETGSSGIDGVGAGSGLAYGEAGADRQVWIMPFESRTNQGDRGGASGFSAST 1012 VI R+ G +GL+ G+ D+Q+W F SR +Q DR G+SGFSA + Sbjct: 557 FQNVIQNRI----------GGNTGLSSGDTLKDKQIWGRVFGSRADQDDRKGSSGFSADS 606 Query: 1013 WGMAAGAEMELERG-RVGISYAYAGTRTSGNTAITGTGSRGRIESNMLALYGSVALGE-L 1070 WG+ GA+ E+ G RVG++Y YA T +GNT + GT + S++ + YGS LG+ Sbjct: 607 WGLGFGADAEVAAGSRVGLAYGYAKTSVNGNTDLAGTAQDSNVSSHLFSAYGSKELGQDR 666 Query: 1071 ALGWQADLGWNGNRLSRDLQFGGLNRIASSRYHSWSAHVGANVSHTLPLSEVLGLVPALQ 1130 ++ WQADLG + N R L FGGLNR A + + ++SAHVGA + LSE L PAL+ Sbjct: 667 SISWQADLGVSDNDSMRQLNFGGLNRTARADFRTYSAHVGAALRQQFALSETTSLTPALR 726 Query: 1131 LDYTRLQSPAYAESGAGDLSLSVQGKRSQALLLGVSTRLNYAVTAASQISSYLGASYDAI 1190 DY+ L+S +Y E+GA L L+V +++ AL+LG T L + +A S++ ++LG YD I Sbjct: 727 ADYSWLKSQSYNETGADALDLNVASQKTDALVLGADTYLQHRFSATSRLDAHLGIGYDTI 786 Query: 1191 NDRDDLVATYAGAPGQAFTAPGTARSAWLFKAGVSYRYQLMATADITLRLDAEGRSGFIN 1250 N +VA YAGAPG +F G +S WL + G+ Y + +++LR DAEGRS ++N Sbjct: 787 NKPGAIVAAYAGAPGLSFVTSGIDQSPWLVRGGIGYTHTTANGTEVSLRYDAEGRSEYLN 846 Query: 1251 QSAALKAGWRF 1261 QSA+++A W F Sbjct: 847 QSASVRAKWMF 857 Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 7/114 (6%) Query: 686 YSGNTTIAAGTLSVP-------SFAQTSEQILTVGVASATQYGKLAVTGTASFASGARLA 738 +S N ++ GT + P ++ Q++ +L +G +S + YGKL VTG A+F AR+ Sbjct: 364 FSNNGSVVIGTAATPGVTLTTANYTQSATGLLQIGASSDSNYGKLLVTGIANFTPDARIN 423 Query: 739 VDVSKAATLARGQTLGGVITAGSLSAPSLNVSDNSLLFDFRPVVANNAVDLNIV 792 VDV+ TL Q L VI+AG+L+A + N+SDNS LF+FR V N +DL +V Sbjct: 424 VDVATVNTLGINQVLARVISAGTLNASTFNISDNSALFNFRQVRNGNDIDLRVV 477 >gi|152981932|ref|YP_001354165.1| autotransporter [Janthinobacterium sp. Marseille] Length = 703 Score = 287 bits (734), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 227/371 (61%), Gaps = 12/371 (3%) Query: 893 AATPVAPVLDRQIQHPSSGDMAQVVTALGRLPDAASLMRAASQTLPRNDSASAIRGSQAS 952 +A A VLD Q+ + +GDM V+ A G+LP + RA +QTLP AI+G+ + Sbjct: 343 SALDAARVLDTQLNNGVTGDMGNVINAFGQLPGNREVARATAQTLPLASGHQAIQGTLGT 402 Query: 953 LNRVIATRVETGSSGIDGVGAGSGLAYGEAGADRQVWIMPFESRTNQGDRGGASGFSAST 1012 +I R+ G SGL+ G+ D+Q+W F SR +Q DR G++GFSA + Sbjct: 403 FQNLIQNRI----------GGNSGLSSGDTLKDKQIWGRAFGSRADQDDRKGSAGFSADS 452 Query: 1013 WGMAAGAEMELERG-RVGISYAYAGTRTSGNTAITGTGSRGRIESNMLALYGSVALG-EL 1070 WG+ GA+ E+ G RVG++Y YA T +GNT + GT I S++ + YGS L E Sbjct: 453 WGLGFGADAEVAAGNRVGLAYGYAKTSVNGNTDLAGTAQDSNISSHLFSAYGSKELSQER 512 Query: 1071 ALGWQADLGWNGNRLSRDLQFGGLNRIASSRYHSWSAHVGANVSHTLPLSEVLGLVPALQ 1130 +L WQADLG + N R L FGGLNR A + Y ++SAHVGA ++ LSE L+PAL+ Sbjct: 513 SLSWQADLGVSDNDSMRQLSFGGLNRSARADYRTYSAHVGAALTQRFALSETTSLMPALR 572 Query: 1131 LDYTRLQSPAYAESGAGDLSLSVQGKRSQALLLGVSTRLNYAVTAASQISSYLGASYDAI 1190 DYT L+S +Y+E+GA L+L+V +++ AL+LG L +++++ S+I LG YDAI Sbjct: 573 ADYTWLKSQSYSETGADALNLNVASQKTDALVLGADLHLLHSLSSTSRIEVNLGVGYDAI 632 Query: 1191 NDRDDLVATYAGAPGQAFTAPGTARSAWLFKAGVSYRYQLMATADITLRLDAEGRSGFIN 1250 N ++VA YAGAPG +F + G S WL + G+ Y ++ +++LR DAE RS ++N Sbjct: 633 NKSGNIVAAYAGAPGLSFVSNGIDHSPWLLRGGIGYTHRTGNGTEVSLRYDAESRSDYLN 692 Query: 1251 QSAALKAGWRF 1261 QSA+++A W F Sbjct: 693 QSASVRAKWAF 703 Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/154 (49%), Positives = 95/154 (61%), Gaps = 7/154 (4%) Query: 642 LHGEGRIDTQAFTLTLNAGIADGS---GKGSLVKQGEGTLRVLGPVRYSGNTTIAAGTLS 698 L G ID+ F N GI S G G L K GTL + G Y GNTT+AAGTL Sbjct: 174 LSGGAYIDSNGF----NIGITTPSLLQGVGGLTKLSAGTLSIAGDNSYGGNTTVAAGTLR 229 Query: 699 VPSFAQTSEQILTVGVASATQYGKLAVTGTASFASGARLAVDVSKAATLARGQTLGGVIT 758 S+ Q + Q+L +G +S YGKLAV TA+FA+ AR+AVDV+ TLA QTL VI+ Sbjct: 230 FDSYTQGAGQVLGIGASSINNYGKLAVNNTATFAADARIAVDVASVNTLAVNQTLNAVIS 289 Query: 759 AGSLSAPSLNVSDNSLLFDFRPVVANNAVDLNIV 792 AG+L+A + NVSDNS LF+F+ + N VDL IV Sbjct: 290 AGTLNASTFNVSDNSALFNFQAIRNGNDVDLRIV 323 >gi|152981607|ref|YP_001352211.1| outer membrane autotransporter [Janthinobacterium sp. Marseille] Length = 923 Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 18/218 (8%) Query: 951 ASLNRVIATRVETGSSGIDGVGAGSGLAYGEAGADRQVWIMPFESRTNQGDRGGASGFSA 1010 A +N ++ R+E + +G AGSGL+ G+ +D+ W F R + +R G SG+ A Sbjct: 612 AHVNGMVFNRLEGNTP--NGTSAGSGLSGGDGISDKAAWGQVFGGRASADERDGVSGYHA 669 Query: 1011 STWGMAAGAEMEL-ERGRVGISYAYAGTRTS--GNTAITGTGSRGRIESNMLALYGSVAL 1067 S G+ GA+ L ER R G + YA T S GN A GS R+++ L Y + Sbjct: 670 SYNGLLLGADAALNERWRAGGLFNYASTSVSNDGNNA----GSYARVDTYGLTAYAAYQ- 724 Query: 1068 GELALGWQADLGWNGNRLSRD----LQFGGLNRIASSRYHSWSAHVGANVSHTLPLSEVL 1123 GE W ++ + R + D L F G + A+ Y A V + + ++E++ Sbjct: 725 GEP---WYVNMSASAMRSNVDAHRVLDFTGFSGTATGSYKGMQYTAAARVGYPINVNEMI 781 Query: 1124 GLVPALQLDYTRLQSPAYAESGAGDLSLSVQGKRSQAL 1161 + P L Y+ L+ AY E+G +L+V + ++ Sbjct: 782 -VTPLAGLTYSSLRLDAYKETGGNGAALNVAASDTHSI 818 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.125 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,728,865 Number of extensions: 118915 Number of successful extensions: 487 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 478 Number of HSP's successfully gapped: 10 Length of query: 1261 Length of database: 1,221,021 Length adjustment: 94 Effective length of query: 1167 Effective length of database: 873,503 Effective search space: 1019378001 Effective search space used: 1019378001 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 135 (56.6 bits)