BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3142.p (303 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982794|ref|YP_001355028.1| LysR family transcriptional reg... 135 2e-33 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 89 4e-19 gi|152981632|ref|YP_001352505.1| cys regulon transcriptional act... 80 1e-16 gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 80 2e-16 gi|152981629|ref|YP_001351947.1| cys regulon transcriptional act... 74 1e-14 >gi|152982794|ref|YP_001355028.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 303 Score = 135 bits (341), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/298 (30%), Positives = 146/298 (48%), Gaps = 5/298 (1%) Query: 6 LQETALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMVLSAG 65 L E L Y E ++ G++ A+ LN+A SA+SRQ++ LEE L L ER RG+ + Sbjct: 5 LNEARLVYLFESIQRGTMRAAADALNIAPSAVSRQVALLEEELGIALIERHTRGIKPTEA 64 Query: 66 GEMLAAHARKMALEADRVVADLQALKGLRSGRVRLASSEGFAIDFLPRVINTFQKQYPGF 125 G++L+ + R+ V+A+LQ L+GLR G +R+ EGF D + + F Y Sbjct: 65 GKLLSQYFREQHSHKADVLAELQELRGLRKGTIRIVLGEGFVSDMMAGPLAKFGADYKDI 124 Query: 126 VFQLFVGIPTMVARQVREGNADIGLTFSRLPEPEIKVVHRQPG--PIALVMRNDHP-LAR 182 L VG + R+V E AD+GL + P P+ K+V R+ PI V+ D P L + Sbjct: 125 SVVLDVGGTNEIMRRVSEDEADMGLIMN--PPPDSKIVSRKYSRQPIYAVVGPDFPLLNK 182 Query: 183 FRHLSLAQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDNDAI 242 + PYPMAL T LRQ+ + +Q+ ++P +T+N L +V + Sbjct: 183 PGPFEIKDFLPYPMALNHTTFGLRQILQLVEQTEQIRLKPKLTTNSFYILRQFVRLQMGV 242 Query: 243 SITGDVTVRYRIERGELSMRPIRDCPVDGRFVEVQTLAGRTLPRSVEIFLDYLVTELS 300 + V + GEL P++ ++ + T +GR L + L Y+ L+ Sbjct: 243 TFLPSFVVSSELASGELFTIPVKHPIMENAEAHLITRSGRKLSSAANKMLQYMSVRLT 300 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 89.0 bits (219), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 101/220 (45%) Query: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMVLSAGGEMLA 70 LRYFL + S + AS+ L++ +S QI +E+ L LF+R R + L+ GE+ Sbjct: 6 LRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTAGELFQ 65 Query: 71 AHARKMALEADRVVADLQALKGLRSGRVRLASSEGFAIDFLPRVINTFQKQYPGFVFQLF 130 +A++ LE D + L L+ L+ GRV F LP ++ F K YPG + Sbjct: 66 VYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGIKITVL 125 Query: 131 VGIPTMVARQVREGNADIGLTFSRLPEPEIKVVHRQPGPIALVMRNDHPLARFRHLSLAQ 190 + ++ +G+ G+ ++ +I V P+ALV+ + HPL ++L + Sbjct: 126 RLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHPLVGSAGITLNE 185 Query: 191 LKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQ 230 L + + + R++ D + VM N I+ Sbjct: 186 LNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIE 225 >gi|152981632|ref|YP_001352505.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 308 Score = 80.1 bits (196), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 114/252 (45%), Gaps = 7/252 (2%) Query: 11 LRYFLEVVRCG-SISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMV-LSAGGEM 68 LR E RCG +++E + L + +SRQI LEE L +FER + + L+ G Sbjct: 6 LRSIRETARCGYNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLTDPGRG 65 Query: 69 LAAHARKMALEADRVVADLQALKGLRSGRVRLASSEGFAIDFLPRVINTFQKQYPGFVFQ 128 + ++ LEA+ + Q G G + +A++ A LP+V+ F+K++P Sbjct: 66 ILQIIDRLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPKVVQVFRKEFPKVRIA 125 Query: 129 LFVGIPTMVARQVREGNADIGLTFSRLPEPEIKV---VHRQPGPIALVMRNDHPLARFRH 185 L P +A V G ADIG+ L + E V +R + V+ + HPL + Sbjct: 126 LQQSTPEHIAEWVLSGKADIGIATEGLSQFEDLVSFPCYRWHHSV--VVPDGHPLLEKKL 183 Query: 186 LSLAQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDNDAISIT 245 ++LA L Y + D T R D A + + + V+T+ + YVL N + I Sbjct: 184 ITLADLAQYSLITYDLGFTGRGHIDEAFKQADITTDIVLTAMDSDVIQQYVLLNLGVGIV 243 Query: 246 GDVTVRYRIERG 257 + ++ G Sbjct: 244 ASMALQQNGSNG 255 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 18/297 (6%) Query: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMVLSAGGEMLA 70 LR F+ V G + A++ L V+ S++S + LE +L LF+R R + L+ G L Sbjct: 8 LRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELTDAGHDLL 67 Query: 71 AHARKMALEADRVVADLQALKGLRSGRVRLASSEGFAIDFLPRVINTFQKQYPGFVFQLF 130 A+K ++ VV + + L L+ GRV +A+ A +P ++ +F ++YPG + Sbjct: 68 PVAQKTLMDLLSVVENSRDLLALKKGRVTIAAGSLHAATVIPDLLKSFNRRYPG----IR 123 Query: 131 VGIPTMVARQVRE----GNADIGLTFSRLPEPEI--KVVHRQPGPIALVMRNDHPLARFR 184 V + + RQVRE G D+G+ + + + +V+ R A++M +H L R + Sbjct: 124 VIVEDVAERQVRELIVAGTVDVGIGMTLDGDNSMLAQVIGRD--KYAVLMHKEHQLMRKK 181 Query: 185 HLSLAQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDNDAISI 244 ++ + L P + +R D +R + + P ++ V ++I Sbjct: 182 TITWQDIAATQPILLKPPSLIRTYLDQHLARVGITLTPAYEVALPWTMTGMVRAGVGVAI 241 Query: 245 --TGDVTVRYRIERGELSMRPIRDCPVDGRFVEVQTLAGRTLPRSVEIFLDYLVTEL 299 TG + V ER L +R I PV R + V T AG L + + +L+ EL Sbjct: 242 VTTGVLPV---AERMGLELRTI-SAPVIERELAVLTRAGYPLSPAAQSLRTHLLEEL 294 >gi|152981629|ref|YP_001351947.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 304 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 109/229 (47%), Gaps = 3/229 (1%) Query: 11 LRYFLEVVRCG-SISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMV-LSAGGEM 68 LR+ E +R +++E + L + S +S+QI LE+ L LF R + + ++ G+ Sbjct: 6 LRFVREAIRNNLNLTEVAAVLYTSQSGVSKQIKDLEDELGIDLFVRSGKRLTSVTRAGDG 65 Query: 69 LAAHARKMALEADRVVADLQALKGLRSGRVRLASSEGFAIDFLPRVINTFQKQYPGFVFQ 128 +++ LE + + G+ +G++ +A++ A LPRV+ F ++P + Sbjct: 66 AVEIVKRILLETENLRRYASQYSGVDTGQLIIAATHTQARYTLPRVVEQFNNEFPKVKLE 125 Query: 129 LFVGIPTMVARQVREGNADIGLTFSRLPE-PEIKVVHRQPGPIALVMRNDHPLARFRHLS 187 L G P VA + G ADIG+ L + P+I +++ HPL + ++ Sbjct: 126 LHQGTPNQVAAMISNGEADIGIASEVLDQSPDILAYPCFSWNHQVIVPLGHPLTKKAPVT 185 Query: 188 LAQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYV 236 L + YP+ +P T R+ D A S+ +V + +T+ + YV Sbjct: 186 LEDIAQYPLITYNPQFTGRKCVDAAFSQAGLVPDFRLTAMDADVIKTYV 234 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 641,995 Number of extensions: 25019 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 23 Length of query: 303 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 220 Effective length of database: 914,170 Effective search space: 201117400 Effective search space used: 201117400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 129 (54.3 bits)