BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3141.p (512 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982591|ref|YP_001355212.1| ABC-type transport system, peri... 167 1e-42 gi|152982644|ref|YP_001353091.1| ABC-type transport system, peri... 111 9e-26 gi|152982754|ref|YP_001351954.1| ABC-type transport system, peri... 95 9e-21 >gi|152982591|ref|YP_001355212.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 522 Score = 167 bits (423), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 146/534 (27%), Positives = 240/534 (44%), Gaps = 63/534 (11%) Query: 10 GWSRCAVLVGGALTALAAHANKANDTLVYASDSEVENISQYHNNLREGVILAHLIWDTLI 69 G+ R + V L ALA A D L A ++V ++ ++ N+ V + I+D L+ Sbjct: 3 GFKRKHLSVLALLGALAMQPLWAAD-LKIALSADVSSLDPHYLNIAPNVAFSSHIFDALV 61 Query: 70 YRDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGDKFSADDVVFTFNYAV----SP 125 D + P LAT+W+ T LR V+F +G KF+A+DVVF+ + SP Sbjct: 62 NVD-ANGKLVPGLATSWRAVDATTWEFKLRHDVKFHDGSKFTAEDVVFSLDRPAKLTNSP 120 Query: 126 ESKAVTRQNIDWIKSVDKLGEYQVRINLKGPFPAALEYLTGPLPIYPAAYF-------KK 178 + I K VD Y VR++ P+ GPL + +A F +K Sbjct: 121 GPYTAYTKQIIAKKIVD---PYTVRLSTATPY--------GPLALDVSAIFIVSKKAAEK 169 Query: 179 VGLEGFS--KAPIGTGPYKVTSVTPGQGVTLVKNTNYFKDSPQGQPSIGNIKFVVIPDPE 236 E F+ KA IGTGPYK S G + + +N Y+ G+ + F +I + Sbjct: 170 ASTEDFNSGKALIGTGPYKFVSFKRGDRIEVARNEQYW----GGKSDWDKVSFRIITNSA 225 Query: 237 TRAAQLMTGAIDWIWRVPPDQADSLKTNPKLTVQSGETMRVGFITLDVT----------- 285 R A L++G +D I VP LK N K ++ + R F +D + Sbjct: 226 PRLAALLSGDVDAIEGVPTADLSKLKGNAKFKLEQKISWRTIFWEIDQSERSSRYVTDKA 285 Query: 286 GSSAPNSPFKDVRVRQAVNYAINRKGYADNLMRGGSQPVYTACFRTQFGCDSNAAIKYD- 344 G P +P +D+RVRQA++ AINR+ D M G + P G N A+K + Sbjct: 286 GKPLPKNPLRDIRVRQAISKAINRQALVDRTMEGLAVPASNIVAPGLLGY--NDALKVEA 343 Query: 345 YNPAKAKELLAAAGYPNGFDTDIYAYRER-----EIAEAIIGDLRKVGIRARLHYMKFAA 399 Y+P AK+LLA AGYPNGF ++ +R ++ + + L ++GI+ ++ + + Sbjct: 344 YDPEGAKKLLAEAGYPNGFVLTLHGPNDRYINDAQVVQTVAQFLNRIGIQTKVETLPLSV 403 Query: 400 LQTEYRSGKTPMSFYSWGSFSMNDTSAFAGVYFKGSAD-DIT---------KDPQLQQYL 449 ++ R+G+ ++ WG+ + + F G+++ DI +P L + + Sbjct: 404 YFSKARAGEFSVALLGWGTLAGD----FGLRTLVGTSNPDIGWGTWNWGKYSNPALDKLI 459 Query: 450 QTADTSIDPAVRKANYSKALELISKQAYIAPMFSYSTYYAYNAQLKFQGYPDEL 503 + S+D A R+ +A + K + P+ +A LK+ DE Sbjct: 460 AASLGSVDQAKREGYAKEAAAVAMKDYAVVPLHHQYATWAMRKGLKYTARTDEF 513 >gi|152982644|ref|YP_001353091.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 535 Score = 111 bits (278), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 114/390 (29%), Positives = 167/390 (42%), Gaps = 72/390 (18%) Query: 61 AHLIWDTLIYRDP----KTNEYKPQLATAWKWE--SPTALVLDLRQGVQFQNGDKFSADD 114 H I+D LI + + + P LAT WK + + LR+GV+F +G F AD Sbjct: 57 GHTIYDPLIAWEANIGTRPGKLIPGLATEWKVDPKDQKKWLFTLRKGVKFHDGSDFKADA 116 Query: 115 VVFTFNYAVSPES-------KAVTRQNIDWIKSVDKLGEYQVRINLK---GPFPAALEYL 164 VV+ + ++ +S A R I I S K+ +Y V I K FP L + Sbjct: 117 VVWNLDKVLNDKSPQFDAKQSAQVRPRIPSIVSYRKVNDYAVEITTKEIDALFPYQLPWF 176 Query: 165 TGPLPIYPAAYFKKVGLE--GFSKAPIGTGPYKVTSVTPGQGVTLVKNTNYFKDSPQGQP 222 I A ++KVG + F+ GTGP+K+ + P + LVKN Y+ S Q Sbjct: 177 L----ISSPAQWEKVGRDWNKFASQASGTGPFKLDKLVPRERAELVKNAGYWDKSRLAQ- 231 Query: 223 SIGNIKFVVIPDPETRAAQLMTGAIDWIWRVPPDQADSLKTNPKLTVQSGETMRVGF-IT 281 + + IPD TRA L+ G +D I PPD LK++ GF + Sbjct: 232 -TDRVILLPIPDALTRANALLNGQVDIIETPPPDVLPQLKSS-------------GFKLV 277 Query: 282 LDVTG-------SSAPNSPFKDVRVRQAVNYAINRKGYADNLMRGGSQPVYTACFRTQ-- 332 +VT S+ P SP+ D+RVR+A N A++R G LM G + P Y T Sbjct: 278 TNVTPHVWPYHFSTQPGSPWTDIRVRKAANLAVDRSGIV-ALMNGLAVPAYGQLDPTSPW 336 Query: 333 FGCDSNAAIKYDY---------------NPAKAKELLAAAGYPNGFDTDIYAYREREIAE 377 FG IKYD P KAK ++A G + Y ++ +AE Sbjct: 337 FG-KPTFKIKYDLAAARALMAQAGYSPSKPLKAKIVIAQGGTGQMLSLPMNEYIQQSLAE 395 Query: 378 AIIGDLRKVGIRARLHYMKFAALQTEYRSG 407 +GI+ + ++ L +RSG Sbjct: 396 --------IGIQVQFEVVELETLYLHWRSG 417 >gi|152982754|ref|YP_001351954.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 585 Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 126/519 (24%), Positives = 204/519 (39%), Gaps = 73/519 (14%) Query: 19 GGALTALAAHANKANDTLVYASDSEVENISQYHNNLREGVILAHLIWDTLIYRDPKTNEY 78 GG L A A DT + +V +IS H N++ L +++D L+Y+D + N Sbjct: 75 GGTL-----RATVAADTTTF----DVHSIS--HGNVQ---WLGRILYDGLVYQDEQGN-I 119 Query: 79 KPQLATAWKWESPTA--LVLDLRQGVQFQNGDKFSADDVVFTFNYAVSPESKA-VTRQNI 135 P LA +W+ SP LR V F +G +F+A+ V + P +K+ + I Sbjct: 120 SPWLAKSWEI-SPDGKTYTFHLRDDVTFSDGVRFNAEAVQVNLEHMRDPATKSPLAAAYI 178 Query: 136 DWIKSVDKLGEYQVRINLKGPFPAALEYLTGPLPIYPAAYFKKVGLEGFSKAPIGTGPYK 195 + EY L P+ L+ L + + + ++ PIG+GP+ Sbjct: 179 RPYLRGRIVDEYTFEATLSEPYSPFLDVLAQSWLSMISPKQIRENPKSIAEHPIGSGPFV 238 Query: 196 VTSVTPGQGVTLVKNTNYFKDSP----QGQPSIGNIKFVVIPDPETRAAQLMTGAIDWIW 251 + S QG VK +Y P +G + I+ +P+ R + L + D+ Sbjct: 239 LESYVRAQGANFVKRADYNWAPPVVRHKGPAYLDRIELTFVPEAMIRYSSLQSAQSDFTL 298 Query: 252 RVPPDQADSLKTNPKLT----VQSGETMRVGFITLDVTGSSAPNSPFKDVRVRQAVNYAI 307 P A +++ +P L V+ G R +TL+V +PF DV++R+A+ AI Sbjct: 299 DAPAQNAQAIRADPALRFHSRVRKGNPFRS--LTLNVE-----KAPFNDVQIRKALALAI 351 Query: 308 NRKGYADNLMRGGSQPVYTACFRTQFGCDSNAAIKYDYNPAKAKELLAAAGYPNGFDTDI 367 +R+G A G +P D + YN A+A L AG+ D Sbjct: 352 DREGVAWITGFGEYEPKSDFLAANSRYYDPSFKNALTYNVAEANRLFDQAGWTT---RDD 408 Query: 368 YAYRERE-------------------IAEAIIGDLRKVGIRARLHYMKFA---------- 398 YR ++ +A AI D RKVG + + A Sbjct: 409 KGYRTKDGKRLSATVLITENPAFPNSVAVAIQADARKVGFELNIELLPLAVITDRRYVGD 468 Query: 399 --ALQTEYRSGKTPMSFYSWGSFSMNDTSAFAGVYFKGSADDITKDPQLQQYLQTADTSI 456 AL Y TP Y + +++ A G +D +L L+ A S Sbjct: 469 YQALGGGYWHTNTPDGLYI-----LYHSNSIASEKLIGQNSSRLRDAELDDVLERARKSN 523 Query: 457 DPAVRKANYSKALELISKQAYIAPMFSYSTYYAYNAQLK 495 DP KA YS+A +++ P + AY + +K Sbjct: 524 DPVELKALYSQAQRRLTEVVPAIPSYESIHMIAYRSYVK 562 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,203,516 Number of extensions: 50496 Number of successful extensions: 122 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 3 Length of query: 512 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 425 Effective length of database: 899,382 Effective search space: 382237350 Effective search space used: 382237350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)