BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3139.p (309 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide... 197 1e-51 gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport... 194 4e-51 gi|152981314|ref|YP_001351949.1| ABC-type transport systems, per... 134 8e-33 gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transp... 107 1e-24 >gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Janthinobacterium sp. Marseille] Length = 301 Score = 197 bits (500), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/283 (42%), Positives = 175/283 (61%), Gaps = 5/283 (1%) Query: 28 WRRQLRRLLGHRGLMLGAAVLAVIVLAAIFAPLLAPHDPFD----QDVTARLIPPVWQAQ 83 +RR R + LG +L +IVLAA+FAP++AP +P+D + +RL P Sbjct: 14 FRRFSRNFFASKVATLGFIILLLIVLAAVFAPVIAPQNPYDLAQIDIMDSRLEPGKQNID 73 Query: 84 GSWEHILGTDKLGRDYLSRLIFGARVSLTIGVAAALISGLIGTTLGVLAGYFGGRTDAVI 143 S ++LGTD+ GRD LS +++G R+S+ +GV + I+ LIG TLG+ AGYFGGR +++I Sbjct: 74 HSLTYVLGTDEQGRDMLSAILYGVRISIIVGVVSTAIALLIGLTLGLFAGYFGGRIESLI 133 Query: 144 SYLITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWDRFAVVTRSATQQLRDAEFIA 203 + +L+ P +LVAL + +L+G + +I+ L + W +A RSA R E+I Sbjct: 134 MRIADIQLSFPPILVALILLALMGPGIGKIIIALVAVQWAYYARTARSAALVERKKEYIE 193 Query: 204 AAKAIGASTPYILLREILPNIMGALIVVATLEMAHAILLEATLSFLGLGVQPPTPSWGLM 263 AA +G S + +LPN + LIV+A L++A AI LEATLSFLG+G+ PS GL+ Sbjct: 194 AATGLGLSPLRTVFHHLLPNCLPPLIVIAALQVASAISLEATLSFLGIGLPVTEPSLGLL 253 Query: 264 VAEGKTYMFF-KPWVIVIPGVALALLVLAINLVGDGLRDVNAP 305 +A G YM K W+ + PG+AL L V+AINLV D LRDV P Sbjct: 254 IANGFDYMMSGKYWISLFPGIALLLTVVAINLVADQLRDVLNP 296 >gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 298 Score = 194 bits (494), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 117/288 (40%), Positives = 177/288 (61%), Gaps = 10/288 (3%) Query: 19 QAALPPLPA-----WRRQLRRLLGHRGLMLGAAVLAVIVLAAIFAPLLAPHDPFDQDVTA 73 QAA+P LP W + LR+L+ M A V+ +IV AA+FAP LAP DP+ + Sbjct: 10 QAAVPVLPTPARGYWSKVLRQLMRDPVAMGAALVVFLIVCAAVFAPWLAPMDPYKGSMIK 69 Query: 74 RLIPPVWQAQGSWEHILGTDKLGRDYLSRLIFGARVSLTIGVAAALISGLIGTTLGVLAG 133 RL+P GS ++LGTD+LGRD LSRL++G R+SL +GV L + IGT++G+LAG Sbjct: 70 RLLP-----IGSEGYLLGTDELGRDMLSRLMYGGRLSLLMGVTPVLAAFGIGTSIGLLAG 124 Query: 134 YFGGRTDAVISYLITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWDRFAVVTRSAT 193 Y GGR + +I ++ A P VL+A+A++ +G + I+ L L+ + V S T Sbjct: 125 YVGGRLNMIIMRVLDVFYAFPSVLLAVAISGALGPGMTNSILALTLVFVPQVVRVAESVT 184 Query: 194 QQLRDAEFIAAAKAIGASTPYILLREILPNIMGALIVVATLEMAHAILLEATLSFLGLGV 253 Q+R ++I AA+ GAS I+ +L N++G + V AT ++ +++L A LSFLGLGV Sbjct: 185 TQVRKLDYIEAARMSGASAFSIIRVHVLGNVLGPVFVYATGLLSVSMILAAGLSFLGLGV 244 Query: 254 QPPTPSWGLMVAEGKTYMFFKPWVIVIPGVALALLVLAINLVGDGLRD 301 +PP P WGLM+ ++ +F PWV +PG+ + + + NL+ DG+R Sbjct: 245 KPPEPEWGLMLNTLRSAIFRNPWVAALPGLLIFITSIGFNLLADGVRS 292 >gi|152981314|ref|YP_001351949.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 303 Score = 134 bits (337), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 142/260 (54%), Gaps = 6/260 (2%) Query: 40 GLMLGAAVLAVIVLAAIFAPLLAPHDPFDQDVTARLIPPVWQAQGSWEHILGTDKLGRDY 99 GL+L A + +++A + LL +DP P S H LGTD+ GRD Sbjct: 41 GLVLAALFVLFLIVATLQPSLLTSNDPLAASAREAFRAP------SAAHWLGTDENGRDV 94 Query: 100 LSRLIFGARVSLTIGVAAALISGLIGTTLGVLAGYFGGRTDAVISYLITTRLAMPVVLVA 159 +RLI+G + SL +G+AA I IG +G+ AG D + LI LA P +L+A Sbjct: 95 WTRLIYGVQPSLLMGLAATAIGLSIGIAVGLFAGLGHRIIDNFLMRLIDVLLAFPDLLLA 154 Query: 160 LAMASLVGGSLKVVIVLLGLLLWDRFAVVTRSATQQLRDAEFIAAAKAIGASTPYILLRE 219 L + + G L ++ +G+ R+A + R+ T +R+A+++ AA +G +++R Sbjct: 155 LVIITFWGQGLVNAVIAVGVASVPRYARMVRAQTHIVRNAQYVEAAVTLGLRRSTVIIRH 214 Query: 220 ILPNIMGALIVVATLEMAHAILLEATLSFLGLGVQPPTPSWGLMVAEGKTYMFFKPWVIV 279 +LPN + ++++AT+ + I A LSFLG G PP+P WG M++ G+ ++ W++ Sbjct: 215 VLPNAIKPILILATIGIGGKIAAGAALSFLGFGAPPPSPEWGSMLSVGRNFLSNAWWLVA 274 Query: 280 IPGVALALLVLAINLVGDGL 299 PGVA+ L V++I +G L Sbjct: 275 APGVAVTLTVVSITALGREL 294 >gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 347 Score = 107 bits (267), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/216 (33%), Positives = 119/216 (55%), Gaps = 3/216 (1%) Query: 87 EHILGTDKLGRDYLSRLIFGARVSLTIGVAAALISGLIGTTLGVLAGYFGGRTDAVISYL 146 E+ LGTD GRD ++RL++G RVS+ G+A L+G G + GYF G+TD Sbjct: 126 ENWLGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLITGAIQGYFAGKTDLFFQRF 185 Query: 147 ITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWDRFAVVTRSATQQLRDAEFIAAAK 206 + AMP + + + AS+ S+ ++++LL L W + R+ + R+ E++ AA+ Sbjct: 186 MEIWGAMPELYLLIIFASIFQPSIGLLLILLSLFGWMSLSDYVRADFLRNRNLEYVQAAR 245 Query: 207 AIGASTPYILLREILPNIMGALIVVATLEMAHAILLEATLSFLGLGVQPPTPSWGLMVAE 266 A+G S I+ R +LPN + ++ M+ AIL +L FLGLGV P T S G ++A+ Sbjct: 246 ALGLSNGQIIWRHVLPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPPSTASLGELLAQ 305 Query: 267 GKTYMFFKPWVIVIPGVALALLVLAINL-VGDGLRD 301 GK + W I + + ++L + +GD LR+ Sbjct: 306 GKNNL--DAWWIALSTFVVLTVMLLLLTNIGDALRN 339 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.140 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 463,936 Number of extensions: 15950 Number of successful extensions: 106 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 4 Length of query: 309 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 226 Effective length of database: 914,170 Effective search space: 206602420 Effective search space used: 206602420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)