BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3138.p (334 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC tr... 270 1e-73 gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport... 243 2e-65 gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transp... 230 7e-62 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 228 6e-61 gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 213 2e-56 >gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 459 Score = 270 bits (689), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 147/316 (46%), Positives = 202/316 (63%), Gaps = 6/316 (1%) Query: 5 LDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQC 64 L V+NL++ G++ AV + F V G ++ LVGESG GKSMT+ ++MGL+ + Sbjct: 137 LTVQNLQMHFSAREGVVKAVEDVSFSVGPGRIMGLVGESGSGKSMTAYSIMGLIDAPGKI 196 Query: 65 SADHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEAMLQQPGVT 124 IL DL +S + ++RG R++MIFQ+PM +LNP + Q+ EA+L V+ Sbjct: 197 VGGKILLQEQDLLDLSPEAMRRIRGNRVAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVS 256 Query: 125 RGEARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTTA 184 + AR A L R GIA+ ++RL+ YPHQ SGG+RQRV IA++L+ PDLII DEPTTA Sbjct: 257 KATARAMARDALARVGIASPDERLQAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTA 316 Query: 185 LDVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLFA 244 LDVTIQ QIL +++L +E GTA+I+ITHDL V++ +AD + VMYAG++VE+ V Q+ Sbjct: 317 LDVTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADDLCVMYAGKIVESGTVQQVLE 376 Query: 245 QPRHPYTRGLLNCIPVRGKTLPGSRLQAIPGVVPSLVGQVSGCAFRNRCALADGACESDP 304 Q RHPYT GL+ P R + G L+ IPG+ PSL+ SGCAFR RC A C + P Sbjct: 377 QTRHPYTYGLIASSPSR--NIAGQPLRQIPGMTPSLLNLPSGCAFRTRCERATAECANTP 434 Query: 305 PMMQQGPRNAPHQARC 320 P+ G H RC Sbjct: 435 PLSIHG----THTWRC 446 >gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 332 Score = 243 bits (619), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 131/303 (43%), Positives = 183/303 (60%), Gaps = 5/303 (1%) Query: 4 LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQ 63 L+ V++L V N HA+ I F ++ GE+L L+GESG GKS+T L+ L P++ Sbjct: 5 LVSVRDLTVAF-VGNRRAHALDKISFDLQAGEVLGLLGESGSGKSVTLRTLLRLHPQRTT 63 Query: 64 CSADHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEAMLQQPGV 123 + + DG D+ + + RG SM+FQEP + +P YT+G Q+ EA+ + Sbjct: 64 RISGSMEVDGMDVLALKGCELEAYRGGTASMVFQEPGLAFDPVYTIGQQITEAIRAHEAL 123 Query: 124 TRGEARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTT 183 A +RAL +L R I A R YPH+LSGG+RQR MIA++L C P L++ADEPTT Sbjct: 124 DHRSAMQRALQMLERVQIPQARRRYDAYPHELSGGMRQRAMIALALACKPRLLLADEPTT 183 Query: 184 ALDVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLF 243 ALD T+Q QIL ++RELQ+E G +VIF+THD+G +AD++AVMY G++VE VA + Sbjct: 184 ALDATVQIQILLLLRELQKETGMSVIFVTHDIGAAVEVADKIAVMYGGRIVEENSVAGIV 243 Query: 244 AQPRHPYTRGLL-NCIPVRGKTLPGSRLQAIPGVVPSLVGQVSGCAFRNRCALADGACES 302 PRHPYT GLL + + + G L A+PG P L GC+F RC+ A C S Sbjct: 244 HNPRHPYTAGLLASTVSTENR---GKPLLAVPGSPPDLSALPLGCSFAPRCSNARQQCTS 300 Query: 303 DPP 305 + P Sbjct: 301 EKP 303 >gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transport system, duplicated ATPase component [Janthinobacterium sp. Marseille] Length = 533 Score = 230 bits (587), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 119/256 (46%), Positives = 162/256 (63%), Gaps = 6/256 (2%) Query: 4 LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQ 63 LLD++NL+V T V + F + GE LVGESG GK++T+L+L+ L + Sbjct: 3 LLDIQNLQVSFDTSK----VVNDVSFSIAAGEKFALVGESGSGKTVTALSLLRL--NQDA 56 Query: 64 CSADHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEAMLQQPGV 123 ILF+G D+ +E +RG ++MIFQEPMT+LNP +T+GNQ+ E ++ G+ Sbjct: 57 TYGGKILFEGQDILQKTEAAMRSVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMLHEGI 116 Query: 124 TRGEARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTT 183 + A R + LL +TGI + R YPH+LSGG RQR MIAM+L C P L+IADEPTT Sbjct: 117 SARAAALRTVELLDKTGIPEPQRRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTT 176 Query: 184 ALDVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLF 243 ALDVTIQ QI+ ++ +LQ+E AV+ ITHDL +V ADRV VM G+++E QLF Sbjct: 177 ALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGRLLEVATTQQLF 236 Query: 244 AQPRHPYTRGLLNCIP 259 + PR YT+ LL P Sbjct: 237 SAPREAYTKKLLASQP 252 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 133/223 (59%), Gaps = 7/223 (3%) Query: 34 GEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHILFDGADLNGMSEKQRMQLRGKRMS 93 GE L +VGESG GKS LAL+ L A + I FDG + S LR RM Sbjct: 301 GETLGIVGESGSGKSTLGLALLRL--SGAHVKGE-IAFDGQAITHQSRDALRPLRA-RMQ 356 Query: 94 MIFQEPMTSLNPSYTLGNQLCEAM-LQQPGVTRGEARERALYLLHRTGIANAEDRLRQYP 152 ++FQ+P SL+P T+ + E + L QP + R+ L G++ + + +YP Sbjct: 357 IVFQDPFASLSPRRTVEQIVGEGLALHQPQLGPHGIRKAVADGLQEVGLS--AEMMTRYP 414 Query: 153 HQLSGGLRQRVMIAMSLMCSPDLIIADEPTTALDVTIQAQILRMIRELQQEFGTAVIFIT 212 H+ SGG RQR+ IA +L+ PDLI+ DEPT++LDV++Q Q+L ++ +LQ+++G A IFI+ Sbjct: 415 HEFSGGQRQRIAIARALVLKPDLILLDEPTSSLDVSVQHQVLLLLADLQKKYGMAYIFIS 474 Query: 213 HDLGVVSRIADRVAVMYAGQVVETTDVAQLFAQPRHPYTRGLL 255 HDL V+ +A RV VM G+VVE + ++P PYT+ LL Sbjct: 475 HDLAVIRAMAHRVMVMKDGRVVEQGLTQTVLSKPSEPYTQRLL 517 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 228 bits (580), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 117/267 (43%), Positives = 171/267 (64%), Gaps = 10/267 (3%) Query: 4 LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQ 63 L++V+NL V +G ++GI F + RGE L LVGESG GKS+TS L+GL ++ Sbjct: 12 LVEVENLHVRFG--HGGPAVIKGISFALHRGECLALVGESGSGKSVTSRTLVGLTGHRSS 69 Query: 64 CSADHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEAMLQQPGV 123 AD + FDG DL +E+ +RG+R+ + Q+ + SL+P T+G ++ E + + Sbjct: 70 LQADRLSFDGDDLRRFNERTWRDIRGRRIGFVMQDALGSLDPLRTVGAEVAEPLKLHAKL 129 Query: 124 TRGEARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTT 183 T+ E E+ + LLH GI E RL QYPHQLSGGLRQR +IA ++ C+P+L+IADEPTT Sbjct: 130 TKQEREEKVIALLHSVGIPQPESRLMQYPHQLSGGLRQRALIASAIACNPELLIADEPTT 189 Query: 184 ALDVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLF 243 ALD +QAQ+L ++ L+ A++ ++HD VVSR+ADRVAVM+ G++VE + + Sbjct: 190 ALDAAVQAQVLDLLESLRTP-DKAMLVVSHDFAVVSRLADRVAVMWHGEIVEQGPLDAIL 248 Query: 244 AQPRHPYTRGLLNCI-------PVRGK 263 P+HPYT+ LL+ + PVR K Sbjct: 249 HDPQHPYTKSLLSAVSSVQKRGPVRQK 275 Score = 167 bits (424), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 102/264 (38%), Positives = 159/264 (60%), Gaps = 14/264 (5%) Query: 3 VLLDVKNL-KVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGL-LPR 60 ++++V NL KV + AV + F +R+GE + +VGESG GK+ + ++GL P Sbjct: 301 IVVEVNNLTKVFFGPDGSRRVAVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGLETPN 360 Query: 61 KAQCSA-DHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEAMLQ 119 D + D +D +E++R+Q ++FQ+P+ S +P YT+ L EA L Sbjct: 361 VGNVRLRDQVWSDLSDAQQRAERKRIQ-------VVFQDPLASFDPRYTVERVLFEA-LG 412 Query: 120 QPGVTRGE-ARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIA 178 G T E R RA+ LLH + + L++ P +LSGG RQR+ IA +L P+++I Sbjct: 413 VAGYTDTEKTRARAIELLHLVRLDQS--YLQRRPIELSGGQRQRIAIARALAPEPEVLIC 470 Query: 179 DEPTTALDVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETTD 238 DEP +ALDV++QAQIL ++ +L+ G + +FI+HDLGV+ R++DR+ VM G VVE+ Sbjct: 471 DEPVSALDVSVQAQILDLLIDLKDRLGLSCLFISHDLGVIYRVSDRILVMKDGIVVESGG 530 Query: 239 VAQLFAQPRHPYTRGLLNCIPVRG 262 V ++F P+H YT+ LL+ IP G Sbjct: 531 VREVFENPQHIYTQTLLSAIPQLG 554 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 213 bits (541), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 135/345 (39%), Positives = 187/345 (54%), Gaps = 25/345 (7%) Query: 4 LLDVKNLKVDLPT-------ENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMG 56 LL +K+LK P E +HAV G+ F V +G+ L +VGESGCGKS T+ Sbjct: 20 LLMIKDLKKYFPVRGELFQRERKFVHAVDGVSFSVAKGKTLGIVGESGCGKSTTAR---- 75 Query: 57 LLPRKAQCSADHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEA 116 L+ R + ++FDG + + + R + + M+FQ+ SLNP T+ + Sbjct: 76 LIARLVTPDSGSMIFDGEGVAEFGGIEFKEFR-RNLQMVFQDSFASLNPRLTISETVAYG 134 Query: 117 MLQQPGVTRGEARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLI 176 Q GV++ +A ERA LL R G+ E +YPH+LSGG RQRV IA +L P L+ Sbjct: 135 P-QAHGVSKAQATERAHALLARVGL-QPEQFASRYPHELSGGQRQRVNIARALAFEPRLV 192 Query: 177 IADEPTTALDVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVET 236 I DE ALD ++QAQ+L +++EL+ E +FI+HDL VV I+D V VMY GQVVE Sbjct: 193 ILDEAVAALDKSVQAQVLNLLQELKAEHDLTYLFISHDLHVVHYISDEVMVMYMGQVVEM 252 Query: 237 TDVAQLFAQPRHPYTRGLLNCIPVRGKTLPGSRLQAIP--GVVPSLVGQVSGCAFRNRCA 294 V ++ RHPYTR LL+ +P P +R Q P G P+ + SGC FR RC Sbjct: 253 GPVEDIYGNSRHPYTRALLSAVP---SMDPANRTQHTPLSGDPPNPINPPSGCRFRERCP 309 Query: 295 LADGACESDPPMMQQGPRNAPHQARCCKLDVPVSE-----MEVAA 334 A+ C + P + NA H C ++ P+S MEVAA Sbjct: 310 HAEAVCAAQVPALMAAAGNAAHTV-ACHMNDPLSGHTQTLMEVAA 353 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 719,418 Number of extensions: 28115 Number of successful extensions: 259 Number of sequences better than 1.0e-08: 53 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 56 Length of query: 334 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 250 Effective length of database: 910,473 Effective search space: 227618250 Effective search space used: 227618250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)