BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3137.p (281 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982636|ref|YP_001355208.1| ABC-type transport system, ATPa... 222 2e-59 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 222 2e-59 gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 221 5e-59 gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transp... 200 1e-52 gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC tr... 153 1e-38 >gi|152982636|ref|YP_001355208.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 333 Score = 222 bits (565), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 114/231 (49%), Positives = 153/231 (66%), Gaps = 3/231 (1%) Query: 38 LKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLAPSSGNVLINGQEV---DPTQR 94 + AV+ +L ++ GE +GLVGESGCGKSTL ++ +GL S+G G ++ R Sbjct: 39 VHAVDHANLAIHSGEVVGLVGESGCGKSTLGRIAVGLHTLSAGTRWWKGADMAQLTTADR 98 Query: 95 REHARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLHGLGNAAERSRKVKDILDLVGMPERT 154 R +Q IFQDPY+SLNPR + +IVG HG+ AAE+ V +L VG+ Sbjct: 99 RRTQLAMQMIFQDPYASLNPRMRIQDIVGEAPLAHGMVKAAEQKDYVAALLQKVGLDPAL 158 Query: 155 HLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLLDLKAEFGLT 214 ++P+Q SGGQR R+ IARAL +RP++L+CDE +ALDVS+QAQ+LNL ++L+ E LT Sbjct: 159 VRRFPHQFSGGQRARIGIARALAVRPELLVCDEAVAALDVSIQAQVLNLFIELRNELNLT 218 Query: 215 YLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYTRMLLASA 265 YLFISHDLGVV H+ DRV +M G IVE ++F+ P HPYT LLASA Sbjct: 219 YLFISHDLGVVRHVSDRVVIMYLGRIVESSPTIELFAQPNHPYTSALLASA 269 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 222 bits (565), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/282 (45%), Positives = 180/282 (63%), Gaps = 16/282 (5%) Query: 6 LPPVPLDD--IALELCALSKVYPIKRGLFQPPGELK-AVNDVSLRLYRGETLGLVGESGC 62 LPP +++ I +E+ L+KV+ F P G + AV++VS L +GET+G+VGESG Sbjct: 291 LPPGVINNNPIVVEVNNLTKVF------FGPDGSRRVAVSEVSFALRKGETVGIVGESGS 344 Query: 63 GKSTLAKMLLGLLAPSSGNVLINGQ---EVDPTQRREHARHIQPIFQDPYSSLNPRKTVG 119 GK+TL +M+LGL P+ GNV + Q ++ Q+R + IQ +FQDP +S +PR TV Sbjct: 345 GKTTLTRMVLGLETPNVGNVRLRDQVWSDLSDAQQRAERKRIQVVFQDPLASFDPRYTVE 404 Query: 120 EIVGLPLKLHGLGNAAERSRKVKDILDLVGMPERTHLQYPNQLSGGQRQRVAIARALILR 179 ++ L + G + + + ++L LV + + + P +LSGGQRQR+AIARAL Sbjct: 405 RVLFEALGVAGYTDTEKTRARAIELLHLVRLDQSYLQRRPIELSGGQRQRIAIARALAPE 464 Query: 180 PDILICDEPTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNKGS 239 P++LICDEP SALDVSVQAQIL+LL+DLK GL+ LFISHDLGV+ + DR+ VM G Sbjct: 465 PEVLICDEPVSALDVSVQAQILDLLIDLKDRLGLSCLFISHDLGVIYRVSDRILVMKDGI 524 Query: 240 IVECQSREQIFSNPQHPYTRMLLASALTPEPGLGIPALAAAA 281 +VE ++F NPQH YT+ LL++ P LGI A + Sbjct: 525 VVESGGVREVFENPQHIYTQTLLSAI----PQLGIKKRVAES 562 Score = 173 bits (438), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 105/234 (44%), Positives = 137/234 (58%), Gaps = 11/234 (4%) Query: 41 VNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLAPSSG----NVLINGQEV----DPT 92 + +S L+RGE L LVGESG GKS ++ L+GL S + +G ++ + T Sbjct: 30 IKGISFALHRGECLALVGESGSGKSVTSRTLVGLTGHRSSLQADRLSFDGDDLRRFNERT 89 Query: 93 QRREHARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLHGLGNAAERSRKVKDILDLVGMP- 151 R R I + QD SL+P +TVG V PLKLH ER KV +L VG+P Sbjct: 90 WRDIRGRRIGFVMQDALGSLDPLRTVGAEVAEPLKLHAKLTKQEREEKVIALLHSVGIPQ 149 Query: 152 -ERTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLLDLKAE 210 E +QYP+QLSGG RQR IA A+ P++LI DEPT+ALD +VQAQ+L+LL L+ Sbjct: 150 PESRLMQYPHQLSGGLRQRALIASAIACNPELLIADEPTTALDAAVQAQVLDLLESLRTP 209 Query: 211 FGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYTRMLLAS 264 L +SHD VV L DRVAVM G IVE + I +PQHPYT+ LL++ Sbjct: 210 -DKAMLVVSHDFAVVSRLADRVAVMWHGEIVEQGPLDAILHDPQHPYTKSLLSA 262 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 221 bits (562), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 119/256 (46%), Positives = 171/256 (66%), Gaps = 6/256 (2%) Query: 21 LSKVYPIKRGLFQPPGEL-KAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLAPSS 79 L K +P++ LFQ + AV+ VS + +G+TLG+VGESGCGKST A+++ L+ P S Sbjct: 26 LKKYFPVRGELFQRERKFVHAVDGVSFSVAKGKTLGIVGESGCGKSTTARLIARLVTPDS 85 Query: 80 GNVLINGQ---EVDPTQRREHARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLHGLGNAAE 136 G+++ +G+ E + +E R++Q +FQD ++SLNPR T+ E V + HG+ + A+ Sbjct: 86 GSMIFDGEGVAEFGGIEFKEFRRNLQMVFQDSFASLNPRLTISETVAYGPQAHGV-SKAQ 144 Query: 137 RSRKVKDILDLVGM-PERTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVS 195 + + +L VG+ PE+ +YP++LSGGQRQRV IARAL P ++I DE +ALD S Sbjct: 145 ATERAHALLARVGLQPEQFASRYPHELSGGQRQRVNIARALAFEPRLVILDEAVAALDKS 204 Query: 196 VQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQH 255 VQAQ+LNLL +LKAE LTYLFISHDL VV ++ D V VM G +VE E I+ N +H Sbjct: 205 VQAQVLNLLQELKAEHDLTYLFISHDLHVVHYISDEVMVMYMGQVVEMGPVEDIYGNSRH 264 Query: 256 PYTRMLLASALTPEPG 271 PYTR LL++ + +P Sbjct: 265 PYTRALLSAVPSMDPA 280 >gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transport system, duplicated ATPase component [Janthinobacterium sp. Marseille] Length = 533 Score = 200 bits (508), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 112/230 (48%), Positives = 151/230 (65%), Gaps = 9/230 (3%) Query: 51 GETLGLVGESGCGKSTLAKMLLGLL-APSSGNVLINGQEVDPTQRREHAR----HIQPIF 105 GETLG+VGESG GKSTL LL L A G + +GQ + Q R+ R +Q +F Sbjct: 301 GETLGIVGESGSGKSTLGLALLRLSGAHVKGEIAFDGQAI-THQSRDALRPLRARMQIVF 359 Query: 106 QDPYSSLNPRKTVGEIVGLPLKLHG--LGNAAERSRKVKDILDLVGMPERTHLQYPNQLS 163 QDP++SL+PR+TV +IVG L LH LG R + V D L VG+ +YP++ S Sbjct: 360 QDPFASLSPRRTVEQIVGEGLALHQPQLGPHGIR-KAVADGLQEVGLSAEMMTRYPHEFS 418 Query: 164 GGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLG 223 GGQRQR+AIARAL+L+PD+++ DEPTS+LDVSVQ Q+L LL DL+ ++G+ Y+FISHDL Sbjct: 419 GGQRQRIAIARALVLKPDLILLDEPTSSLDVSVQHQVLLLLADLQKKYGMAYIFISHDLA 478 Query: 224 VVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYTRMLLASALTPEPGLG 273 V+ + RV VM G +VE + + S P PYT+ LLA+++ PG G Sbjct: 479 VIRAMAHRVMVMKDGRVVEQGLTQTVLSKPSEPYTQRLLAASVYARPGEG 528 Score = 183 bits (465), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 103/234 (44%), Positives = 140/234 (59%), Gaps = 8/234 (3%) Query: 39 KAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLL--APSSGNVLINGQEV----DPT 92 K VNDVS + GE LVGESG GK+ A LL L A G +L GQ++ + Sbjct: 17 KVVNDVSFSIAAGEKFALVGESGSGKTVTALSLLRLNQDATYGGKILFEGQDILQKTEAA 76 Query: 93 QRREHARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLHGLGNAAERSRKVKDILDLVGMPE 152 R + IFQ+P ++LNP T+G + L LH +A + + ++LD G+PE Sbjct: 77 MRSVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMLHEGISARAAALRTVELLDKTGIPE 136 Query: 153 --RTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLLLDLKAE 210 R L YP++LSGGQRQR IA AL +P +LI DEPT+ALDV++Q QI+ LL L+ E Sbjct: 137 PQRRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQIVELLNQLQRE 196 Query: 211 FGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYTRMLLAS 264 + L I+HDL +V H DRV VM KG ++E + +Q+FS P+ YT+ LLAS Sbjct: 197 ENMAVLMITHDLNLVRHFADRVGVMEKGRLLEVATTQQLFSAPREAYTKKLLAS 250 >gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 459 Score = 153 bits (386), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 97/243 (39%), Positives = 137/243 (56%), Gaps = 16/243 (6%) Query: 36 GELKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLL-APSSGNVLINGQ------- 87 G +KAV DVS + G +GLVGESG GKS A ++GL+ AP ++ G+ Sbjct: 151 GVVKAVEDVSFSVGPGRIMGLVGESGSGKSMTAYSIMGLIDAPGK---IVGGKILLQEQD 207 Query: 88 --EVDP-TQRREHARHIQPIFQDPYSSLNPRKTVGEIVGLPLKLHGLGNAAERSRKVKDI 144 ++ P RR + IFQDP +LNP + + + H + A +D Sbjct: 208 LLDLSPEAMRRIRGNRVAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVSKATARAMARDA 267 Query: 145 LDLVGM--PERTHLQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILN 202 L VG+ P+ YP+Q SGG RQRVAIA AL+ +PD++ICDEPT+ALDV++Q QIL Sbjct: 268 LARVGIASPDERLQAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALDVTIQGQILY 327 Query: 203 LLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNKGSIVECQSREQIFSNPQHPYTRMLL 262 + L E G ++I+HDL V+ L D + VM G IVE + +Q+ +HPYT L+ Sbjct: 328 EMQKLCRESGTALIWITHDLSVIAGLADDLCVMYAGKIVESGTVQQVLEQTRHPYTYGLI 387 Query: 263 ASA 265 AS+ Sbjct: 388 ASS 390 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 658,851 Number of extensions: 27169 Number of successful extensions: 271 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 185 Number of HSP's successfully gapped: 67 Length of query: 281 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 199 Effective length of database: 917,867 Effective search space: 182655533 Effective search space used: 182655533 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)