BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3131.p (244 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980926|ref|YP_001354897.1| ABC transporter, ATP-binding pr... 138 3e-34 gi|152982345|ref|YP_001352956.1| ABC-type transport system, invo... 120 8e-29 gi|152983439|ref|YP_001353228.1| ABC-type transporter ATPase com... 115 3e-27 gi|152980250|ref|YP_001352755.1| macrolide ABC efllux protein [J... 110 9e-26 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 107 6e-25 >gi|152980926|ref|YP_001354897.1| ABC transporter, ATP-binding protein [Janthinobacterium sp. Marseille] Length = 219 Score = 138 bits (348), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/211 (39%), Positives = 123/211 (58%), Gaps = 10/211 (4%) Query: 13 IDMRELSFTWPGQSQPALLLERLSVAPGEHIFISGPSGSGKSTLLATIGGIILPQAGQVE 72 + + L+ +PG P L + S+A GEH + GPSGSGKSTLL I I+ PQ+G + Sbjct: 2 LQISNLTHRYPGAHIPQLNVPAFSLARGEHAIVIGPSGSGKSTLLHLIAAILTPQSGDIR 61 Query: 73 VLGQPLQTLSAARRDRFRVDHIGYIFQQFNLLPYLSILDNVLLPCQFSPYRKDRARQQGD 132 V + TL+ D++R HIG++ Q+ L+P L+ DN+LL S D AR Sbjct: 62 VADTSIGTLNPRAADQWRGRHIGFLPQKLALIPSLNARDNILLAAYASGQTSDIAR---- 117 Query: 133 DLKQVAQSLLAALDLAPALWRRPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSALDSD 192 A +LL+AL LA +P QLS GQ+QRVA AR++ RP++++ADEPT+ LD Sbjct: 118 -----ADALLSALGLADKATAKP-HQLSQGQKQRVALARAMFNRPQLLLADEPTANLDDA 171 Query: 193 RQQAFLDLLQRECAQSGAALVFVSHDQRLAE 223 ++ + LL + + GA+L+ +HD R+ E Sbjct: 172 SCRSAITLLLAQANELGASLILSTHDARVLE 202 >gi|152982345|ref|YP_001352956.1| ABC-type transport system, involved in lipoprotein release, ATPase component [Janthinobacterium sp. Marseille] Length = 228 Score = 120 bits (301), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 109/213 (51%), Gaps = 8/213 (3%) Query: 19 SFTWPGQSQPALLLERLSVAPGEHIFISGPSGSGKSTLLATIGGIILPQAGQVEVLGQPL 78 +FT S L L + GE + I G SGSGKSTLL +GG+ P AG V +L Q Sbjct: 14 TFTQGKYSVNVLKDVNLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPSAGSVTLLNQDF 73 Query: 79 QTLSAARRDRFRVDHIGYIFQQFNLLPYLSILDNVLLPCQFSPYRKDRARQQGDDLKQVA 138 TL +R R +G+++Q +LLP S LDNV +P + A ++ A Sbjct: 74 ATLDEKKRGDLRNKSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPRSEAHEK-------A 126 Query: 139 QSLLAALDLAPALWRRPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSALDSDRQQAFL 198 +++LA + L + P +LS G++QRVA AR+L+ +P ++ADEPT LD Sbjct: 127 RAILARVGLEHRVTHVP-GELSGGERQRVALARALVTQPACVLADEPTGNLDRVTAHKTF 185 Query: 199 DLLQRECAQSGAALVFVSHDQRLAERFTRRIAL 231 DL+ G A + V+HD LA R + L Sbjct: 186 DLMLELSRTLGTAFIIVTHDVELATHCDRIMRL 218 >gi|152983439|ref|YP_001353228.1| ABC-type transporter ATPase component [Janthinobacterium sp. Marseille] Length = 229 Score = 115 bits (288), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 125/232 (53%), Gaps = 14/232 (6%) Query: 3 LPDSSSPAAAIDMRELSFTWPGQSQPALLLERL--SVAPGEHIFISGPSGSGKSTLLATI 60 +P+SS+ AI+ L+ + +L+ + +V G+ + I G SGSGKSTLL + Sbjct: 1 MPESSTLYPAIEAINLTKRVADATGELTILQAVDFTVQAGDTLAIVGASGSGKSTLLGLL 60 Query: 61 GGIILPQAGQVEVLGQPLQTLSAARRDRFRVDHIGYIFQQFNLLPYLSILDNVLLPCQFS 120 G+ P G V++ G + L R R +G++FQ F LL +L+ L+NV+LP + Sbjct: 61 AGLDTPSDGTVKLDGTDIFALDEDGRAGLRKSKLGFVFQSFQLLGHLNALENVMLPLEL- 119 Query: 121 PYRKDRARQQGD-DLKQVAQSLLAALDLAPALWRRPVTQLSIGQQQRVAAARSLIGRPEI 179 +GD K+ A+++LA + L+ L P LS G+QQRVA AR+ + P + Sbjct: 120 ---------RGDGKAKEKAEAMLARVGLSTRLKHYP-KYLSGGEQQRVALARAFVSEPPL 169 Query: 180 IVADEPTSALDSDRQQAFLDLLQRECAQSGAALVFVSHDQRLAERFTRRIAL 231 + ADEPT +LD+ +A + L+ + G+ LV V+HD +A R I + Sbjct: 170 LFADEPTGSLDAATGEAVIQLMFELNRERGSTLVLVTHDPSIAALCKRTITI 221 >gi|152980250|ref|YP_001352755.1| macrolide ABC efllux protein [Janthinobacterium sp. Marseille] Length = 657 Score = 110 bits (275), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 15/224 (6%) Query: 13 IDMRELSFTWPGQSQPALLLE--RLSVAPGEHIFISGPSGSGKSTLLATIGGIILPQAGQ 70 I++R ++ T+ +L L + GE + I G SGSGKSTL+ +G + P G Sbjct: 19 IELRGVTKTYRNGGLEVEVLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDRPTTGS 78 Query: 71 VEVLGQPLQTLSAARRDRFRVDHIGYIFQQFNLLPYLSILDNVLLPCQFS--PYRKDRAR 128 +G+ + R D G++FQ +NL+ S ++NV +P +S P + AR Sbjct: 79 YHFMGRDVSGFDRDELAMLRRDDFGFVFQSYNLIASASAVENVEVPAMYSGLPPAERHAR 138 Query: 129 QQGDDLKQVAQSLLAALDLAPALWRRPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSA 188 AQ+LLA L LA RP QLS GQQQRV+ +R+L+ II+ADEPT A Sbjct: 139 ---------AQALLAELGLAERSHHRP-NQLSGGQQQRVSISRALMNGGRIILADEPTGA 188 Query: 189 LDSDRQQAFLDLLQRECAQSGAALVFVSHDQRLAERFTRRIALE 232 LDS Q + LL A+ G ++ ++H + +A+ R I ++ Sbjct: 189 LDSKSGQDVMKLLADLSAR-GHTVLLITHAKEVADHAQRLIEIK 231 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 107 bits (267), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 113/224 (50%), Gaps = 16/224 (7%) Query: 9 PAAAIDMRELSFTWPGQSQPALLLERLSVAPGEHIFISGPSGSGKSTLLATIGGIILPQA 68 P AID + S+ S L R+ V PGE I I G SGSGKSTLL I G+ Sbjct: 2 PLIAIDNVKKSYG----SNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDE 57 Query: 69 GQVEVLGQPLQTLSAARRD-RFRVDHIGYIFQQFNLLPYLSILDNVLLPCQFSPYRKDRA 127 G + V G L R+ R +V G IFQQFNL P+LS+ N+++ SP Sbjct: 58 GSISVAGSHLGKSELELRNLRLKV---GMIFQQFNLFPHLSVGRNIMI----SPMIVKGV 110 Query: 128 RQQGDDLKQVAQSLLAALDLAPALWRRPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTS 187 ++ D + +A L + L+ P QLS GQQQRVA AR+L P+ ++ DE TS Sbjct: 111 SEK--DARALAMKNLEKVGLSEKFDSFP-DQLSGGQQQRVAIARALSMEPQALLCDEVTS 167 Query: 188 ALDSDRQQAFLDLLQRECAQSGAALVFVSHDQRLAERFTRRIAL 231 ALD + L+++ R A G L+ V+H+ R A R+ Sbjct: 168 ALDPELVNEVLNVV-RGLAHEGMTLIMVTHEMRFAREVCDRVVF 210 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 499,672 Number of extensions: 18945 Number of successful extensions: 265 Number of sequences better than 1.0e-08: 55 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 58 Length of query: 244 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 163 Effective length of database: 921,564 Effective search space: 150214932 Effective search space used: 150214932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)