BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3129.p (278 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 92 4e-20 gi|152981215|ref|YP_001354983.1| ABC-type multidrug transport sy... 88 7e-19 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 85 5e-18 gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPa... 74 8e-15 gi|152982657|ref|YP_001352784.1| ABC-type cobalamin/Fe3+-siderop... 72 3e-14 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 92.0 bits (227), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 12/225 (5%) Query: 4 AISLDNLTVSYRRHPALHHVSGAFERGSLTAIVGPNGAGKSTLLKSMLGLVRCNDGRV-- 61 +I + N+ + AL++VS F G LTA++GP+G GK+TLL+ + GL + + G+V Sbjct: 2 SIEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 62 ------QTHVDSRRIAYLPQQAEIDRSFPINVLDCVLLGYWQAKGNWGGIDAAMRQRAVQ 115 HV R++ ++ Q + + + V + + G ++ ++++ + Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKH--MTVFENIAFGLRVRPAATRPSESQIKEKVTK 119 Query: 116 ALAAVGLDGFATRPVSSLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTGDLLRII 175 L V LD A R LS GQ QR+ AR L + V+LLDEPF A+DA+ +L R + Sbjct: 120 LLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWL 179 Query: 176 SAWHAERR-TVIAVLHDHDQVRRAFPQTLLLAR-NVVAWGETAEV 218 H + T I V HD ++ Q +L+ + NV G +V Sbjct: 180 RRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDV 224 >gi|152981215|ref|YP_001354983.1| ABC-type multidrug transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 303 Score = 87.8 bits (216), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 94/197 (47%), Gaps = 17/197 (8%) Query: 3 AAISLDNLTVSYRRHPALHHVSGAFERGSLTAIVGPNGAGKSTLLKSMLGLVRCNDGRVQ 62 AAI ++N+ SYR AL+ VS + E G ++GPNGAGK+TL+ + GL R + G V Sbjct: 2 AAIQINNVEKSYRALKALNGVSLSIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGNVT 61 Query: 63 TH----VDSRR-----IAYLPQQAEIDRSFPINVLDCVLLGYWQAKGNWGGIDAAMRQRA 113 H V + R + +PQ+ D F + + GY+ K N ID M Sbjct: 62 IHGHDVVSNYRQARKLLGVVPQELVFDPFFTVRETLRMQSGYYGLKNNDAWIDEVMHH-- 119 Query: 114 VQALAAVGLDGFATRPVSSLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTGDLLR 173 + L A + +LS G +RVL A+ L+ VI+LDEP +D L + Sbjct: 120 ------LDLTNKADANMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWK 173 Query: 174 IISAWHAERRTVIAVLH 190 IS + E TV+ H Sbjct: 174 FISRLNREGHTVVLTTH 190 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 84.7 bits (208), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 106/225 (47%), Gaps = 25/225 (11%) Query: 18 PALHHVSGAFERGSLTAIVGPNGAGKSTLLKSMLGLVRCNDGRVQTHVDS----RRIAYL 73 P + +S E G AIVG +G GKSTLL++ GL+ + G VQ + RR A + Sbjct: 20 PVIQDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSGDVQLKLPQLPGRRRRAVV 79 Query: 74 PQQAEIDRSFPI-NVLDCVLLGYWQAKGNWGGIDAAMRQ-RAVQALAAVGLDGFATRPVS 131 Q R P V D V G GI A +Q R QAL GL F R Sbjct: 80 FQDG---RLLPWRTVADNVAYGLETL-----GISADEQQSRIKQALQLTGLAEFGERWPH 131 Query: 132 SLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTGDL-LRIISAWHAERRTVIAVLH 190 LS GQ QRV AR L +++L+DEPF+A+DA T +L +I W A + V+ V H Sbjct: 132 QLSGGQVQRVGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIRIWQATQSAVMFVTH 191 Query: 191 DHDQVRRAFPQTLLLARNVVAWGETAEVMCEE---NLQRARAMAE 232 D D + + LA V+ G + + E +L R R ++ Sbjct: 192 DID-------EAVFLADRVIVLGGSPATVVENLRIDLPRPRVRSD 229 >gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 74.3 bits (181), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 1 MNAAISLDNLTVSYRRHPALHHVSGAFERGSLTAIVGPNGAGKSTLLKSMLGLVRCNDGR 60 M++ + ++ L SY + V+ E G + ++GPNGAGK+T ++GLV + GR Sbjct: 1 MSSKLIVNGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGR 60 Query: 61 VQTH-VDSRR----------IAYLPQQAEIDRSFPINVLDCVLLGYWQAKGNWGGIDAA- 108 ++ VD R ++YLPQ+A + R ++V D + + N +++A Sbjct: 61 IELDGVDISRLPIHKRAQLGLSYLPQEASVFRK--LSVEDNIRAVLELQRVNGKALNSAQ 118 Query: 109 MRQRAVQALAAVGLDGFATRPVSSLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTT 168 + QR LA + ++ SLS G+ +RV AR L + +LLDEPF +D Sbjct: 119 LEQRLDTLLADLQIEKLRENQAMSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAV 178 Query: 169 GDLLRIISAWHAERRTVIAVLHDHD 193 ++ RI+ + R + ++ DH+ Sbjct: 179 IEIQRIVRFL--KERGIGVLITDHN 201 >gi|152982657|ref|YP_001352784.1| ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Janthinobacterium sp. Marseille] Length = 256 Score = 72.4 bits (176), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 32/211 (15%) Query: 30 GSLTAIVGPNGAGKSTLLKSMLGLVRCNDGRVQTHVDS----------RRIAYLPQQAEI 79 G ++G NGAGKSTLL++++GL + G+++ + + R +YLPQ Sbjct: 26 GECWCVIGRNGAGKSTLLRTLVGLRDADGGQLELNGRALAKWPLQDLARERSYLPQGRS- 84 Query: 80 DRSFPINVLDCVLLG--------YWQAKGNWGGIDAAMRQRAVQALAAVGLDGFATRPVS 131 +F V++ VL YW++ ++ A AL + D A R V Sbjct: 85 -DAFGYRVIETVLTARHPYHESAYWESDADYAA--------AHTALQIMDADTLAERDVR 135 Query: 132 SLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTGDLLRIISAWHAE-RRTVIAVLH 190 SLS G+ QRV A +L QD ++LLDEP +A+D ++ ++S E ++ V+ V H Sbjct: 136 SLSGGERQRVAIAAVLAQDTPLMLLDEPTSALDLAHQVSVMGLLSRLCREQQKAVVMVSH 195 Query: 191 DHDQVRRAFPQTLLLARNVVAW--GETAEVM 219 D + LLL + W G AEVM Sbjct: 196 DLNLAHSVATHALLLMGD-GRWHAGPVAEVM 225 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 574,829 Number of extensions: 22972 Number of successful extensions: 242 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 43 Length of query: 278 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 196 Effective length of database: 917,867 Effective search space: 179901932 Effective search space used: 179901932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)