BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3125.p (312 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980802|ref|YP_001354168.1| LysR family transcriptional reg... 149 2e-37 gi|152983043|ref|YP_001352606.1| LysR family transcriptional reg... 139 2e-34 gi|152980163|ref|YP_001352024.1| transcriptional regulator [Jant... 90 1e-19 gi|152982782|ref|YP_001354764.1| LysR family transcriptional reg... 89 3e-19 gi|152981601|ref|YP_001353561.1| LysR family transcriptional reg... 69 3e-13 >gi|152980802|ref|YP_001354168.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 149 bits (377), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 106/299 (35%), Positives = 157/299 (52%), Gaps = 12/299 (4%) Query: 1 MPSPLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRG- 59 M SP+ L AL+ FEA+ R +S + AA EL +T +AV Q ++SLE++ PLF R + G Sbjct: 1 MKSPIY-LNALRAFEASARHQSFSAAAAELNVTPAAVGQLVRSLEDWLGTPLFNRSASGR 59 Query: 60 --VEPTEAALAFYAEVKASLDRIALAAEHLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQ 117 + TEAA E++A LD+++L E L + V+ + +P+ A +WL+PR+ FQ Sbjct: 60 ARLIATEAAQRALPEIRAGLDKLSLGLERLKEGAINGVLTVTVSPAFAAKWLLPRIDTFQ 119 Query: 118 IDNPRIEVRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFL-E 176 P +VR+ T++ + V D+ + + +G + LD+ P+ SP L + Sbjct: 120 AAWPDTDVRLDTSLKP-VDFVALGIDIGVRYGNGDWAGLIAEKLLDEEIYPVCSPLLLRQ 178 Query: 177 THPIRVPRDFVEVPLIH-LSSRS----AAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAA 231 +R P D + LIH LS S +W QWL AGV M G +S LQAA Sbjct: 179 KQRLRKPTDLGKETLIHDLSIESHKDFPSWKQWLKVAGVDHTETMRGMRINNSAAVLQAA 238 Query: 232 ATDQGVGMGTLALVDDDLAAGRLVRLFPEIVLHGE-GYHMLYRSNADSNPALKTFITWL 289 QG+ + + DD+AA RLVRLFP+I Y ++YR+ S P L F WL Sbjct: 239 IDGQGIALARSVMARDDVAASRLVRLFPDIKFTSPLAYFIVYRAERASLPRLAAFRDWL 297 >gi|152983043|ref|YP_001352606.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 146/292 (50%), Gaps = 11/292 (3%) Query: 8 LKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGVE---PTE 64 L AL+ FEA+ R +S + AA EL +T +AV QQ++ LEE+ PLF R G PT+ Sbjct: 7 LNALRAFEASARHQSFSAAATELNVTPAAVGQQVRGLEEWLGTPLFYRSGTGTSRLMPTD 66 Query: 65 AALAFYAEVKASLDRIALAAEHLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDNPRIE 124 A +++A D++++ E L A + + +P+ A +WL+PR+ +F P+ + Sbjct: 67 TAQRALPDIRAGFDKLSIGLERLKQASTGGALTVTVSPAFAAKWLMPRIDRFHQAYPQTD 126 Query: 125 VRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETH-PIRVP 183 +R+ T + + + + DV + + G ++ D+ P+ SP +L+ H P P Sbjct: 127 LRLDTNL-KALDFLASGIDVGVRYGSGDWPGLAAIKLADEEIYPVCSPSYLKRHGPFVDP 185 Query: 184 RDFVEVPLIH-LSSRS----AAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVG 238 LIH LS ++ W WL AG + G +S LQAA +QG+ Sbjct: 186 AALAGHTLIHDLSMQNHPGFQTWRSWLDAAGFPSVQSERGLQINNSAAVLQAAIDNQGIA 245 Query: 239 MGTLALVDDDLAAGRLVRLFPEIVLHGE-GYHMLYRSNADSNPALKTFITWL 289 +G ++ +DL GRLVRLF I + Y+++YR P + F WL Sbjct: 246 LGRSVMMREDLTVGRLVRLFETISSPSKLAYYIVYRPECAELPRVAAFREWL 297 >gi|152980163|ref|YP_001352024.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 128/290 (44%), Gaps = 7/290 (2%) Query: 5 LPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGVEPTE 64 LPP+ AL FEAA R S +AA EL IT SA S +I+ LEE+ + LFLR R V TE Sbjct: 5 LPPVHALSAFEAAARHGSFAIAAEELCITPSAFSHRIRLLEEFVGERLFLRDGRSVSLTE 64 Query: 65 AALAFYAEVKASLDRIA-LAAEHLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDNPRI 123 + V+ +L +A H + R V++ P+ A +P L+ F P I Sbjct: 65 FGRRYLDVVRDALRSLADFPLPHRHPLAQPR-VKITVPPTFARYLFLPHLADFTALYPDI 123 Query: 124 EVRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLET-HPIRV 182 + V ++ Y + + D+ I + + ++ P+ SP +LE ++ Sbjct: 124 TIEVFLSVPLYDMALSET-DLEIRFGAGKYPDTTTEKLFEEPVFPVVSPAYLEKIGGLKT 182 Query: 183 PRDFVEVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMGTL 242 P D + L L S W W AG+ G + L L+A GV + Sbjct: 183 PADLQKAQL--LRSALEPWQAWFEVAGLDWPEPATGLRIDDLGLLLEAVRHGYGVALTRK 240 Query: 243 ALVDDDLAAGRLVRLFP-EIVLHGEGYHMLYRSNADSNPALKTFITWLKQ 291 ++ +A G +V LF ++ Y+M+Y + P + F+ W+ + Sbjct: 241 HFAEEMIANGEVVPLFDIQLTTPQHAYYMVYEQSVRERPEVVLFMNWMME 290 >gi|152982782|ref|YP_001354764.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 321 Score = 89.0 bits (219), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 116/258 (44%), Gaps = 9/258 (3%) Query: 5 LPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGVEPTE 64 LPP+ L FEA R S L A EL I+ SAVS +IK LEE LF + S T Sbjct: 8 LPPIPCLIAFEARARLGSGVLVARELCISPSAVSHRIKQLEEATNLQLFRKTSGEAVLTA 67 Query: 65 AALAFYAEVKASLDRIALAAEHLALAGKSRV-VRLIAAPSVAMRWLIPRLSQFQIDNP-- 121 A+ V+ +L+ ++ + A K+R +R+ A P+ A + +IPRLS Q P Sbjct: 68 DGQAYLEAVRNALNTLSHFGRNPASNTKTRKQLRIAAPPTFAYQIIIPRLSLLQEHFPAL 127 Query: 122 RIEVRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETH-PI 180 R E++++ + D D+ I GY R LD+ +P+ SP +L H P Sbjct: 128 RFELQLSVPLVGLKADDS---DIEIRFGIGHYPGYHVTRILDEDVLPMCSPEYLAQHGPF 184 Query: 181 RVPRDFVEVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMG 240 D L+ + W W AG+ R + + +QAAA G+ + Sbjct: 185 ENYEDLQRATLLRCTIEP--WHPWFQAAGLDWREPIGTLQFVDIGSCMQAAAWGHGIALA 242 Query: 241 TLALVDDDLAAGRLVRLF 258 + A+GRLV +F Sbjct: 243 RPKMAASLTASGRLVPVF 260 >gi|152981601|ref|YP_001353561.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 69.3 bits (168), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 125/294 (42%), Gaps = 9/294 (3%) Query: 8 LKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGVEPTEAAL 67 L L F + T AA L ++ SA+S IK+LE+ PL R +R V TEA Sbjct: 6 LSDLAAFATVAEEGNFTRAAARLGMSQSALSHAIKALEQRIGLPLLTRTTRSVSTTEAGE 65 Query: 68 AFYAEVKASLDRIALAAEHLA-LAGKSRVVRLIAAPSVAMRWLI-PRLSQFQIDNPRIEV 125 ++ +LD I L+ L+ R V I +A RWLI P L++F P I V Sbjct: 66 RLLRTLRPALDGITAELASLSDLSETPRGVVRITTDQIAARWLIQPVLARFVEQYPNITV 125 Query: 126 RVTTTMSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPL-ASPHFLETHPIRV-P 183 V V D FD + L VR DV V + ASP +L + + P Sbjct: 126 EVNND-DGLTNIVADRFDAGVRLGELIEQDMISVRIGPDVKVAIVASPAYLANRGLPLSP 184 Query: 184 RDFVEVPLIH--LSSRSAAWSQWLGKAGVAVRRKMPG-TVYEHSFLSLQAAATDQGVGMG 240 +D ++ L++ ++ + G + ++ G ++ LS A G+G Sbjct: 185 QDLKNHRCLNYRLATAGGLYAWEFTRNGRMIEVRVDGPLIFNDWTLSYAAVLEGAGIGYC 244 Query: 241 TLALVDDDLAAGRLVRLFPEIVLHGEGYHMLYRSNADSNPALKTFITWLKQMGL 294 V+ D+A GRLVR+ + GYH LY + PAL I L+ L Sbjct: 245 FEHQVEQDIADGRLVRMLQDWSPTFHGYH-LYFPDRRRTPALSALIDALRYENL 297 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 738,146 Number of extensions: 29700 Number of successful extensions: 134 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 7 Length of query: 312 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 229 Effective length of database: 914,170 Effective search space: 209344930 Effective search space used: 209344930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)