BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3122.p
         (693 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979775|ref|YP_001352938.1| excinuclease ABC subunit B [Jan...  1250   0.0  

>gi|152979775|ref|YP_001352938.1| excinuclease ABC subunit B
           [Janthinobacterium sp. Marseille]
          Length = 696

 Score = 1250 bits (3235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/689 (86%), Positives = 646/689 (93%)

Query: 1   MAELTPINPELDESKFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVT 60
           MA+L+ ++  +DE+K VTFP+SPF+L+Q FPPAGDQP AI KLVEG+ DGLFYQTLLGVT
Sbjct: 1   MADLSQVSNSVDEAKVVTFPNSPFRLHQPFPPAGDQPTAIAKLVEGIEDGLFYQTLLGVT 60

Query: 61  GSGKTYTMANTIARLGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAY 120
           GSGKTYT+AN IAR+GRPAIVFAPNKTLAAQLYSEFREFFP NAVEYFVSYYDYYQPEAY
Sbjct: 61  GSGKTYTVANVIARMGRPAIVFAPNKTLAAQLYSEFREFFPENAVEYFVSYYDYYQPEAY 120

Query: 121 VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTL 180
           VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVI+ATVSAIYGIGNP+EYHQMILTL
Sbjct: 121 VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIIATVSAIYGIGNPSEYHQMILTL 180

Query: 181 RAKDKVSQRDVIARLIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEI 240
           RAKDKVSQRDVIARLI MQYTRNE+DFGRGTFRVRGDTID+FPAEHAELA+R+E FDDEI
Sbjct: 181 RAKDKVSQRDVIARLIAMQYTRNEIDFGRGTFRVRGDTIDIFPAEHAELAIRLEMFDDEI 240

Query: 241 DSLQLFDPLTGRVRQKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLI 300
           +SLQLFDPLTGRV+QKIPRFT+YPGSHYVTPR+TVLRAIETIK+EL ERLEFFRKE+KL+
Sbjct: 241 ESLQLFDPLTGRVKQKIPRFTVYPGSHYVTPRATVLRAIETIKDELRERLEFFRKESKLV 300

Query: 301 EEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSGGKPGDPPPTLVDYLPKDALMFLDESH 360
           EEQRLEQRTRFD+EMM EIGFTKGIENYSRHLSG K GDPPPTLVDYLP+DALMF+DESH
Sbjct: 301 EEQRLEQRTRFDLEMMQEIGFTKGIENYSRHLSGAKAGDPPPTLVDYLPQDALMFMDESH 360

Query: 361 VLIGQLNGMYNGDRARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTVFVSATPADYEN 420
           VL+GQLNGMYNGDRARK NLVDYGFRLPSALDNRPL+FDEFE KMRQ VFVSATPADYEN
Sbjct: 361 VLMGQLNGMYNGDRARKTNLVDYGFRLPSALDNRPLRFDEFEGKMRQMVFVSATPADYEN 420

Query: 421 THADQVVEQVVRPTGLVDPVIAVRPATTQVDDLMQEIHDRIAKNERVLVTTLTKRMAEQL 480
           THADQVVEQVVRPTGLVDP+I+VRPA+TQVDDLM EI DR+ KNERVLVTTLTKRMAEQL
Sbjct: 421 THADQVVEQVVRPTGLVDPLISVRPASTQVDDLMSEITDRVKKNERVLVTTLTKRMAEQL 480

Query: 481 TEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILD 540
           TEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLD+PEVSLVAILD
Sbjct: 481 TEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDLPEVSLVAILD 540

Query: 541 ADKEGFLRSERSLIQTIGRAARNLNGMAILYGDVVTDSMHKAISETERRRAKQLAFNEAN 600
           ADKEGFLRSERSLIQTIGRAARNL GMAILYGD VTDSM +AI ETERRRAKQ+AFN AN
Sbjct: 541 ADKEGFLRSERSLIQTIGRAARNLTGMAILYGDKVTDSMRRAIDETERRRAKQIAFNTAN 600

Query: 601 GIVPTGIKKEIRELIDGIFNPAQARTELMVAEEKKNYESMSEKQISKEIKRLEKQMQEHA 660
            I P GIKK IRELIDG+++P +AR EL VA+E   YE+MSEKQ+SKEIKRLEK M  HA
Sbjct: 601 NITPIGIKKHIRELIDGVYSPQEARLELQVAQEHAKYEAMSEKQVSKEIKRLEKLMLGHA 660

Query: 661 KNLEFEKAAAARDQLHLLKQQLFGAPGSD 689
           KNLEFEKAA  RDQL +LK+QLFGAPG+D
Sbjct: 661 KNLEFEKAAQVRDQLRILKEQLFGAPGAD 689


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,566,818
Number of extensions: 65846
Number of successful extensions: 222
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 603
Effective length of database: 888,291
Effective search space: 535639473
Effective search space used: 535639473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)