BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3120.p
         (344 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979877|ref|YP_001352889.1| selenide,water dikinase [Janthi...   334   6e-93

>gi|152979877|ref|YP_001352889.1| selenide,water dikinase
           [Janthinobacterium sp. Marseille]
          Length = 348

 Score =  334 bits (856), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 173/337 (51%), Positives = 230/337 (68%), Gaps = 4/337 (1%)

Query: 1   MSDPIRLTQYSHGAGCGCKISPQVLEVILAGSGAQHLDPKLWVGNASRDDAAVYAIDEER 60
           M+  I+LT +SHG GCGCKI+P VL  IL  S    +  +L VG  + DDAAVY +++E+
Sbjct: 1   MNAAIKLTSFSHGGGCGCKIAPGVLADILKNSSGFPVPKELMVGIETSDDAAVYKLNDEQ 60

Query: 61  GVVSTTDFFMPIVDDPFDFGRIAATNAISDIYAMGGDPLMAIAILGWPVNVLPPEVAREV 120
            +++TTDFFMPIVDDPFDFGRIAATNAISD+YAMGG P+MA+A++G P+N LP E   ++
Sbjct: 61  ALIATTDFFMPIVDDPFDFGRIAATNAISDVYAMGGTPIMALALVGMPINQLPLETIGQI 120

Query: 121 VRGGRAACDAAGIPLAGGHSIDAPEPIFGLAVTGVVEKRHMKRNDTASAGCLLYLTKPLG 180
           ++GG++ C  AGIP+AGGH+ID+ EPI+GL V G+V    +KRN  A AG  L L KPLG
Sbjct: 121 IKGGQSICAEAGIPIAGGHTIDSVEPIYGLVVLGLVHPSKVKRNADAKAGDKLILGKPLG 180

Query: 181 IGILTTAEKKGKLRPDDVGVARDWMCQLNQPGSRFGKLAGVAAMTDVTGFGLLGHLVEMC 240
           +GIL+ A KK  L  D          +LN+PG    +L GV A+TDVTGFGLLGHL+E+ 
Sbjct: 181 VGILSAALKKNVLNDDGYAAMIANTTKLNKPGMALSRLDGVHALTDVTGFGLLGHLLELA 240

Query: 241 EGSGVSARIQHALVPSLPGVPYYLAEGCVPGGTGRNFESYGSKI---SPLSESQKHLLCD 297
            G+ ++A++Q + +P LP V     +GCV G +GRN+++YG  +   + +S  QK LL D
Sbjct: 241 RGAKLTAKLQMSSIPMLPQVLQLAEQGCVTGASGRNWDAYGHDVTLATGVSAVQKALLSD 300

Query: 298 PQTSGGLLVAVRPEANPEFLATAAALGL-ELAPIGEL 333
           PQTSGGLLVA  P +  E LA     G    A IGE+
Sbjct: 301 PQTSGGLLVACDPASVDEVLALFRQEGFAHAAVIGEM 337


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 894,073
Number of extensions: 41386
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 260
Effective length of database: 910,473
Effective search space: 236722980
Effective search space used: 236722980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)