BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3119.p
         (363 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980717|ref|YP_001353226.1| tRNA 2-selenouridine synthase [...   104   9e-24

>gi|152980717|ref|YP_001353226.1| tRNA 2-selenouridine synthase
           [Janthinobacterium sp. Marseille]
          Length = 356

 Score =  104 bits (259), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 145/307 (47%), Gaps = 25/307 (8%)

Query: 1   MSDLQPSRALFIADTPMLDARAPVEFGKGAFPTAVNLPLMNDRERHEVGLRYKEQGQQSA 60
            ++L P+   F A   ++D R+P EF     P A+N P+++D ERH VG  YK+     A
Sbjct: 10  FAELLPTLEQFDA---IIDVRSPSEFALDHIPGAINCPVLDDAERHRVGTLYKQTSTFEA 66

Query: 61  IALGHQLVSGAV-KEARIAAWAQFAKAHPEGCLYCFRGGLRSQITQQWLQSEAGIAYPRV 119
             +G  L++  + +   I    +     P   +YC+RGG RS      L   A I +P V
Sbjct: 67  KKIGAALIAHNIARHIEILFIDKPQDWKP--LIYCWRGGNRSGAMALIL---ARIGWPAV 121

Query: 120 A--GGYKALRHFLMDTIDQALAECGFVVVGGMTGCGKTDVLLQL----DNALDLEAYANH 173
              GGYK  R  +   + +  A   F V+ G TG GK+ +L  L       LDLE  A H
Sbjct: 122 QLDGGYKEYRRHVNAELAELPARFSFNVICGPTGSGKSRLLQALAATGAQVLDLEQLAAH 181

Query: 174 RGSSFGKRAS-PQPAPIDFEHRLAIALIKLQAQGHHWFALEDESRLIGVCALPLALHQRM 232
           RGS  G   +  QP+   FE  +  AL +   +      +E ES+ +G   +P  L   M
Sbjct: 182 RGSVLGNLPTEAQPSQKKFESDIWQALRRFDPK--QIVYIESESKKVGDLRVPDVLIDAM 239

Query: 233 QSLPMVWLEDSREGRVERILRDYVSGLCEEYL------ALDPHHGFERYRA-HLLAALGK 285
           +    + LE + E R++ +++DY   L +  L       L   HG E+    H+LA+ GK
Sbjct: 240 RKSSCISLELTHENRIKLLMQDYSHFLNDPALLNTQLSCLLQLHGREKITQWHMLASEGK 299

Query: 286 LVKRLGD 292
           + + +G+
Sbjct: 300 MEQLVGE 306


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 905,063
Number of extensions: 38754
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 279
Effective length of database: 910,473
Effective search space: 254021967
Effective search space used: 254021967
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)