BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3117.p
         (455 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980910|ref|YP_001353544.1| major facilitator transporter [...    71   1e-13
gi|152980838|ref|YP_001354006.1| major facilitator transporter [...    57   2e-09

>gi|152980910|ref|YP_001353544.1| major facilitator transporter
           [Janthinobacterium sp. Marseille]
          Length = 436

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 177/421 (42%), Gaps = 55/421 (13%)

Query: 31  ILFLLFVVTTVNYADRATLSIAGSAMKTELSLDPVTMGYIFSAFSWAYVLAQLPGGWLLD 90
           +L  LF+     Y DR  +  A  +M  +L       G     F   Y L ++P   ++ 
Sbjct: 28  LLPFLFLCYVAAYLDRVNVGFAKLSMLNDLQFSETIYGLGAGIFFIGYFLFEVPSNIIMH 87

Query: 91  RFGSKTIYMWSIALWSFFTFLQAGVTWMSTGAAVVALFLLRFMVGLAEAPSFPANGRIVA 150
           + G++      +  WS    L A   +++T       +++RF++G+AEA  FP     + 
Sbjct: 88  KVGARRWIARIMITWSI---LSAATMFVTTP---TMFYVIRFLLGVAEAGFFPGIVLYLT 141

Query: 151 AWYPTKERGTASAIFNSAQYFAAVIFTPLMAWIVHSYS-------WHHVFTVMGVVGILL 203
            W+PT  RG  +A+F      A V+  PL  WI+++++       W  +F +  +  + L
Sbjct: 142 YWFPTSRRGRMNALFMIGIPIAGVVGGPLSGWIMNAFAGMNGWHGWQWLFLLEALPSLAL 201

Query: 204 ALIWGRIIYSP----------KDHPRINAAELHHIESGGGLVDMDNKKVAAPSVQGKGYL 253
            ++   + Y P          ++   I  A +    S G      +  VA      K +L
Sbjct: 202 GIM--TLFYLPNSIRASSWLSENEKAILEANIAKDNSVGD----KSHSVAGVFTNPKVWL 255

Query: 254 RQLLSNRMLLGVYIGQYCINVITYFFLTWFPVYLVQERGM-SILKAGFVASIPAVCGFIG 312
              +    ++G+Y        I+++  T     LV+  G+   L  G + +IP  CG I 
Sbjct: 256 MAAIYFCCMMGLY-------GISFYLPT-----LVKASGVKDALDVGLLTAIPYTCGVIA 303

Query: 313 GVVGGLISDRLIKSGLSVTWSRKI-PIVGGMLLSMTMILCNYVQAQWLVVGIMALAFFGK 371
            ++    +DR+ +      W   I   +GG+ L ++ +  + V     V+ +MAL+    
Sbjct: 304 TLLVARSADRMRER----RWHFAIASALGGLGLFLSTVYGDNV-----VLALMALSLGTA 354

Query: 372 GVGA---LGWAVVADTAPKQIVGLSGGLFNMFGNVAGITTPIVIGYIVKETGSFSGALVF 428
           G+ +   + W   +            GL N  GN+AG  +P ++G++   TGS +  + F
Sbjct: 355 GMLSTMPVFWTYPSAILGGAAAAAGIGLINSVGNLAGFVSPTIVGWLKDVTGSTNAGMYF 414

Query: 429 V 429
           V
Sbjct: 415 V 415


>gi|152980838|ref|YP_001354006.1| major facilitator transporter
           [Janthinobacterium sp. Marseille]
          Length = 462

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 176/423 (41%), Gaps = 42/423 (9%)

Query: 33  FLLFVVTTVNYADRATLSIAG---SAMKTELSLDPVTMGYIFSAFSWAYVLAQLPGGWLL 89
           FL  V+    + D   L++      ++KTE  L     G + SA      L  +  G L 
Sbjct: 28  FLFMVIALAFFFDNLDLAMMAYLLGSIKTEFGLTTAQAGMLGSASFVGMALGAVSSGMLA 87

Query: 90  DRFGSKTIYMWSIALWSFFTFLQAGVTWMSTGAAVVALFLLRFMVGLAEAPSFPANGRIV 149
           D+FG K I+  S+ +W   ++L       ST    V+L + R ++G+      P    ++
Sbjct: 88  DKFGRKPIFQISMIIWGVASYL------CSTANDPVSLAIYRVLLGIGMGMELPLAQTLL 141

Query: 150 AAWYPTKERGTASAIFNSAQYFAAVIFTPLMAWIVHSYSWHHVFTVMGVVGILLALIWGR 209
           + + P K RG   A+ +     A +    +  +++ SYSW  +F +  +  + L +I   
Sbjct: 142 SEFIPAKRRGKYLALMDGNWPIAFICAGLMSYYVLASYSWRTMFLLGAIPAVFLFVIRRY 201

Query: 210 IIYSPK-DHPRINAAELHHIESG-GGLVDMDNKKVAAPSVQGKGYLRQLLS--------- 258
           +  SP+    +   AE  +I  G  G V    K  + P +     +R   +         
Sbjct: 202 VPESPRWLESKGRHAEASNIVDGIEGEVKKILKVDSLPPIVQTAMMRDQEAFGIKVLWSP 261

Query: 259 --NRMLLGVYIGQYCINVITYFFLTWFPVYLVQERGMSILKAGFVASIPAVCGFIGGVVG 316
              R  L V+ G +   ++ ++ L  +   L+Q+ G+ + K+  + ++   C   GG+ G
Sbjct: 262 VYRRRTLTVW-GLWFFALLGFYGLNTWIGALLQQSGLEVTKS-VLYTVYIAC---GGIPG 316

Query: 317 GLISDRLIKSGLSVTWSRKIPIVGGMLLSMTMI-LCNYVQAQ-----WLVVGIMALAFFG 370
            L +  +++      W RK   V  +L    M+ +  +V +       LV     + FF 
Sbjct: 317 FLWAAWVVER-----WGRKPACVSTLLGGAVMVFIYGWVASSAHTFIALVSAGAMMQFFM 371

Query: 371 KGVGALGWAVVADTAPKQIVGLSGGLFNMFGNVAGITTPIVIGYI---VKETGSFS-GAL 426
            G+ A+ +    +  P +      G+ +  G +  +  P ++G I   V + G F+ GA 
Sbjct: 372 FGMWAVLYTYTPELYPTRARASGCGMASTVGRLGSLLGPTIVGVILPLVGQIGVFTVGAS 431

Query: 427 VFV 429
            FV
Sbjct: 432 CFV 434


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,124,259
Number of extensions: 50976
Number of successful extensions: 277
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 5
Length of query: 455
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 369
Effective length of database: 903,079
Effective search space: 333236151
Effective search space used: 333236151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)