BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3114.p (594 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis pro... 427 e-120 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 399 e-112 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 399 e-112 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 389 e-109 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 384 e-108 >gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust. Identities = 280/605 (46%), Positives = 373/605 (61%), Gaps = 50/605 (8%) Query: 1 MRNLTVRFSLMSALALFSIMIVVGAAVGIFALGRANQATEYVHEIAEHVIIINDAYKDST 60 NL+++ L+ +A IM++VG A+G+F L N + + V+ + S Sbjct: 2 FNNLSIKMRLIGTMAFMGIMLIVGGAMGVFGLQSTNNSLQDVY---------GNQLASSQ 52 Query: 61 RTRSALTRAYANLKEKNDPAIAEGALKSAQGSYERGLKFVDE-------FSKLPDLAGEE 113 +A+TR + + I K+A+ + R +E + LP A E+ Sbjct: 53 AINTAITRLFQARSTIDRVLIKSSGSKNAE-IFARADTLRNESDAAWKQYYALPMNADEK 111 Query: 114 PVVKKELIESARSLSELLMKASGLLKAGDASAYSE---LNDKQINPAGARFSKALDEFQK 170 + + L E A L+KA A + E L ++ P + +++ ++ Q+ Sbjct: 112 KLADEVTANRDTYLRE---GALPLIKAIQAGLFEEAELLMLEKATPLFIKMTQSAEKLQE 168 Query: 171 RAMKLNDTAANERQREYSMVVWLVVVG-LIGAMFLVIGVHFMLRNIVLTPLNRAVHLLDL 229 MK + Q +S+ + G L G + + I F++R I + PL ++ Sbjct: 169 FQMKAAAASYESSQSMFSLFRIAAIGGVLFGLLVVAIAAFFLIRAI-MQPLGEMLNHFSA 227 Query: 230 VANGDLTTKVEVQSSNEIGRLFAAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDL 289 ++ GDLT+++EV+S NE+G+L ++ MQ++L+ TV VR S +I + ++IAAGN+DL Sbjct: 228 ISAGDLTSRIEVKSRNEMGKLMGGLQVMQKSLIETVFNVRQGSTAIGVATQQIAAGNLDL 287 Query: 290 SSRTEQQASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVAQVVDTM 349 SSRTEQQASSLEETA+SME+LT TVKQNADNA QANQLA SAS+ A KGG VV+QVVDTM Sbjct: 288 SSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAASASTVAEKGGVVVSQVVDTM 347 Query: 350 QAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 409 + IN S++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA Sbjct: 348 EEINTSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA 407 Query: 410 AAAKEIKSLIDDSVDKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIE 469 AAAKEIK+LI DSVDKVE GS+LV +AG TM EVV VQ+VTDI+ EI AS+EQS GIE Sbjct: 408 AAAKEIKTLIGDSVDKVEIGSKLVAEAGVTMKEVVHGVQQVTDIMSEITAASQEQSAGIE 467 Query: 470 QVNRAITQMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKINAQQAASAPKPRPA 529 QVN+AI+QMD+VTQQNAALVE+AAAAA+SL QA L AVS+FK++ AA+ K + Sbjct: 468 QVNQAISQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAAAAPVKKTAS 527 Query: 530 PVAPVAPPPAAPAPAPVAAVTAAPAAAKAAPKLPPAKLPPAKPAKAAPAAPASRLKDDAQ 589 +A V A +PAPV AAPA P + A AA + Sbjct: 528 KIAAV-----ASSPAPVKRAIAAPA--------------PVRQKVANGAAT------NGD 562 Query: 590 DWEEF 594 DWEEF Sbjct: 563 DWEEF 567 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust. Identities = 266/532 (50%), Positives = 339/532 (63%), Gaps = 58/532 (10%) Query: 78 DPAIAEGALKSAQGSYERGLKFVDEFSKLPDLAGEEPVVKKELIESARSL---SELLMKA 134 DPA+A+ + K A ++ ++ + + L + E+ + K +++ +S E +MK Sbjct: 78 DPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAK-ILDVRKSFLAGREGVMKL 136 Query: 135 SGLLKAGDASAYSELNDKQINPAGARFSKALDEF---QKRAM-----KLNDT-AANERQR 185 K +A+ Y D PA F EF +++ M +L+D AA+ RQ Sbjct: 137 KTEGKEAEAAKYF---DTTFLPAADSFKNHFTEFVELERKQMDAGTAQLSDVEAASTRQ- 192 Query: 186 EYSMVVWLVVVGLIGAMFLVIGVHFMLR-NIVLT-PLNRAVHLLDLVANGDLTTKVEVQS 243 + L+ AM L G+ R I +T PL AV VA GDLT ++ +S Sbjct: 193 ----------LMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKAES 242 Query: 244 SNEIGRLFAAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSLEET 303 +E G+L AA++ M L V VR +++I T++ EIAAGN+DLSSRTEQQASSLEET Sbjct: 243 KDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEET 302 Query: 304 AASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVAQVVDTMQAINASSRKIVDII 363 A+SME+LT TVKQNADNA QANQLA SAS A KGG+VV+QVV TM +IN SSRKIVDII Sbjct: 303 ASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDII 362 Query: 364 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSV 423 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK+LI DSV Sbjct: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSV 422 Query: 424 DKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQ 483 KV+ G++LV +AGATM E+V S++RVTDI+GEI AS+EQS GIEQ+N+AI QMD VTQ Sbjct: 423 GKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQ 482 Query: 484 QNAALVEQAAAAAQSLQAQATNLVGAVSIFKI-NAQQAASAPKPRPAPVAPVAPPPAAPA 542 QNA+LVE+AAAAA+S+Q QA L V FK+ NAQ+ A PR + V +AP PAA Sbjct: 483 QNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQE---ANPPRASGVTRLAPKPAA-- 537 Query: 543 PAPVAAVTAAPAAAKAAPKLPPAKLPPAKPAKAAPAAPASRLKDDAQDWEEF 594 + A AAP LP + A PA +WE+F Sbjct: 538 --------GSAGLAVAAP------LPQRRANGALPA---------GDEWEQF 566 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust. Identities = 253/449 (56%), Positives = 314/449 (69%), Gaps = 31/449 (6%) Query: 149 LNDKQINPAGARFSKALDEFQKRAMKLNDTAANERQREYSMVVWLVVVGLIGAMFLVIGV 208 +N+K + PA +S ++D + KL D A Q + + +++GL+ A + +GV Sbjct: 148 INEKML-PAMNAYSNSIDAVLQNEKKLIDEAGTSIQSAF-LSGRSLLIGLLAAA-VALGV 204 Query: 209 HFMLR-NIVLT-PLNRAVHLLDLVANGDLTTKVEVQSSNEIGRLFAAIRSMQQALLTTVS 266 F R I +T PLNRAV + VA+GDL+ K+EV S++E G+L A++ M Q+L TVS Sbjct: 205 FFAWRLAISITRPLNRAVTVARTVASGDLSAKIEVSSNDETGQLMQALKDMTQSLNKTVS 264 Query: 267 RVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSLEETAASMEQLTGTVKQNADNALQANQ 326 VRS +++I T++++IA+GN+DLSSRTE+QASSL ETAASM QLT TV+QNADNA QAN Sbjct: 265 EVRSGTETIATASRQIASGNLDLSSRTEEQASSLGETAASMGQLTSTVRQNADNARQANS 324 Query: 327 LAHSASSTASKGGEVVAQVVDTMQAINASSRKIVDIISVIDGIAFQTNILALNAAVEAAR 386 LA SAS A KGG VV++VVDTM +IN S+RKIVDIISVIDGIAFQTNILALNAAVEAAR Sbjct: 325 LAMSASDVAVKGGSVVSEVVDTMASINESARKIVDIISVIDGIAFQTNILALNAAVEAAR 384 Query: 387 AGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSVDKVEAGSQLVEQAGATMSEVVTS 446 AGEQGRGFAVVASEVR+LAQRSAAAAKEIK LI DSV KVEAGS+LV +AG+TM+E+V S Sbjct: 385 AGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGDSVGKVEAGSKLVNEAGSTMNEIVDS 444 Query: 447 VQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNAALVEQAAAAAQSLQAQATNL 506 V+RVTDI+ EI AS+EQS+GI+QVN+AI QMD+VTQQNAALVE+AAAAA+SLQ QA NL Sbjct: 445 VKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQVTQQNAALVEEAAAAAESLQDQAGNL 504 Query: 507 VGAVSIFKINAQQAASAPKPRPAPVAPVAPPPAAPAPAPVAAVTAAPAAAKAAPKLP-PA 565 VS FK++ Q PA V+ + P P AA P L P Sbjct: 505 ARVVSQFKLDGNQ--------PAFVSSLDDIPVVRNTTPAIRTQAAK------PLLSNPV 550 Query: 566 KLPPAKPAKAAPAAPASRLKDDAQDWEEF 594 P + A A A DWEEF Sbjct: 551 HAPKREKATAG-----------ADDWEEF 568 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 389 bits (1000), Expect = e-109, Method: Compositional matrix adjust. Identities = 273/608 (44%), Positives = 369/608 (60%), Gaps = 61/608 (10%) Query: 3 NLTVRFSLMSALALFSIMIVVGAAVGIFALGRANQATEYVHEIAEHVIIINDAY----KD 58 NL + L A A+ +++ VG++ L QAT ++ E A + ++ Y + Sbjct: 5 NLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEEAAHKERLTHEWYLGNVAN 64 Query: 59 STRTRSALTRAYANLKEKNDPAIAEGALKSAQGSYERG----LKFVDEFSKLPDLAGEEP 114 + RT + R +N E E L+S + S + L +E KL + GE+ Sbjct: 65 AIRTAA---RIRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKLMSVVGEKR 121 Query: 115 VVKKELIESARSLSELLMKASGLLKAGDASAYSELNDKQINPAGARFSKALDE------- 167 ++ + + K A A ++L + +++PA A +++++ Sbjct: 122 TAYMDIRKD-------VFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQV 174 Query: 168 -FQKRAMKLNDTAANERQREYSMVVWLVVVGLIGAMFLVIGVHFMLRNIVLTPLNRAVHL 226 FQ+ ++ A+ R ++++ L + LI + FL ++L + PL+ AV + Sbjct: 175 IFQRAKADVDALYASGR----TILITLGSIALILSAFLA----WLLSRSITRPLDYAVSV 226 Query: 227 LDLVANGDLTTKVEVQSSNEIGRLFAAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGN 286 VA+GDL K++ S++E G+L A+R M L+ +VS+VR+ ++I T++ +IAAGN Sbjct: 227 ARTVASGDLRNKIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGN 286 Query: 287 MDLSSRTEQQASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVAQVV 346 +DLSSRTE+QASSLEETA+SME+LT TVKQNADNA QANQLA SAS A KGGEVV++VV Sbjct: 287 LDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVV 346 Query: 347 DTMQAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQ 406 DTM+ INAS++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQ Sbjct: 347 DTMEQINASAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQ 406 Query: 407 RSAAAAKEIKSLIDDSVDKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQST 466 RSAAAAKEIK+LI DSVDKVE GS+LV +AG TM EVV SV+ VTDI+ EI AS+EQS Sbjct: 407 RSAAAAKEIKTLIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSA 466 Query: 467 GIEQVNRAITQMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKINAQQAASAPKP 526 GIEQVN+AI QMD+VTQQNAALVE+AAAAA+SL QA L AVS+FK+++ AA+AP Sbjct: 467 GIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKLDSITAAAAP-S 525 Query: 527 RPAPVAPVAPPPAAPAPAPVAAVTAAPAAAKAAPKLPPAKLPPAKPAKAAPAAPASRLKD 586 + V APA +A +P K A Sbjct: 526 KKVNVGTRVASHGAPANRAIA-------------------VPVTKKISNGAATGGD---- 562 Query: 587 DAQDWEEF 594 DWEEF Sbjct: 563 ---DWEEF 567 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 384 bits (986), Expect = e-108, Method: Compositional matrix adjust. Identities = 239/450 (53%), Positives = 303/450 (67%), Gaps = 40/450 (8%) Query: 153 QINPAGARFSKALD---EFQKRAMK-----LNDTAANERQREYSMVVWLVVVGLIGAMFL 204 ++ PA + LD EFQ M ++ +AN +Q +V L V+ +I + FL Sbjct: 149 EVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAHEVSANAQQ----LVGILSVIAVIISAFL 204 Query: 205 VIGVHFMLRNIVLTPLNRAVHLLDLVANGDLTTKVEVQSSNEIGRLFAAIRSMQQALLTT 264 F+ + PL++AV L VA+GDLT + V S +E G+L A++ M L+ Sbjct: 205 ----GFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSKDETGQLLQALQDMNNGLVRI 260 Query: 265 VSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSLEETAASMEQLTGTVKQNADNALQA 324 V++VR +D+I T++ +IA GN+DLSSRTE+QASSLEETA+SME+LT TVKQNADNA Q+ Sbjct: 261 VTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQS 320 Query: 325 NQLAHSASSTASKGGEVVAQVVDTMQAINASSRKIVDIISVIDGIAFQTNILALNAAVEA 384 NQLA +AS A +GG VV+QVV+TM +IN S+ KIVDII VIDGIAFQTNILALNAAVEA Sbjct: 321 NQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIGVIDGIAFQTNILALNAAVEA 380 Query: 385 ARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSVDKVEAGSQLVEQAGATMSEVV 444 ARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK+LIDDSV+KV GS+LV AG TM+EVV Sbjct: 381 ARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVV 440 Query: 445 TSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNAALVEQAAAAAQSLQAQAT 504 SV+RVTDI+GEI AS+EQ+ GIEQ+N+A+ QMD+VTQQNAALVE+AAAAA+SLQ QA Sbjct: 441 ESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEEAAAAAESLQDQAN 500 Query: 505 NLVGAVSIFKINAQQAASAPKPRPAPVAPVAPPPAAPAPAPVAAVTAAPAAAKAAPKLPP 564 NL VS+FK++A A R AAPA PV+ P Sbjct: 501 NLSQVVSVFKLDANAVALQATSR----------VAAPASRPVSK--------------PA 536 Query: 565 AKLPPAKPAKAAPAAPASRLKDDAQDWEEF 594 ++ A K AS D +WE+F Sbjct: 537 QQIRSANVDKQIVRQRASATAGDGDEWEQF 566 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.124 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 856,821 Number of extensions: 27729 Number of successful extensions: 220 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 21 Length of query: 594 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 505 Effective length of database: 891,988 Effective search space: 450453940 Effective search space used: 450453940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)