BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3113.p
         (306 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980584|ref|YP_001352972.1| dihydrodipicolinate synthase [J...    82   4e-17

>gi|152980584|ref|YP_001352972.1| dihydrodipicolinate synthase
           [Janthinobacterium sp. Marseille]
          Length = 292

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 8/197 (4%)

Query: 40  LEWLAPYGASALFAAGGTGEFFSLVPGEYSDIIRTAVDTCRGKVPIIAGAGG-STRAAIA 98
           ++W    G   +   G TGE  ++   E+ ++IR AV+    +VP+IAG GG ST  AI 
Sbjct: 28  IDWHIAEGTDGIVIVGTTGESPTVSVDEHCELIRVAVEHTAKRVPVIAGTGGNSTSEAIE 87

Query: 99  YAQEAERLGAHGILLMPHYLTEASQDGIAAHVEAVCKSVNFGVIIYN---RAVCKLNADT 155
             Q A+ +GA   L +  Y    +Q+G+  H + + ++V+  VI+YN   R V  ++ DT
Sbjct: 88  LTQFAKDVGADASLQVVPYYNRPTQEGMYQHFKKIAEAVDLPVILYNVPGRTVADMSNDT 147

Query: 156 LQKLAERCPNLIGFKDGIGEIEPMVHIRRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYS 215
           + +L+ + P +IG KD  G I     + R +   F    G    +  A A    G     
Sbjct: 148 IVRLS-KVPGIIGVKDATGNIGRGTELLRLVRKDFAVYSG---DDATAMALMFCGAKGNI 203

Query: 216 SAVFNFIPKTAVQFYQA 232
           S   N  P+   Q   A
Sbjct: 204 SVTANVAPRAMHQLCDA 220


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 772,564
Number of extensions: 33761
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 223
Effective length of database: 914,170
Effective search space: 203859910
Effective search space used: 203859910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)