BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3112.p
         (255 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981662|ref|YP_001352127.1| GntR family transcriptional reg...    54   8e-09

>gi|152981662|ref|YP_001352127.1| GntR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 251

 Score = 54.3 bits (129), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 113/262 (43%), Gaps = 31/262 (11%)

Query: 1   MDVSDTP--NPLLRPRRKPQSLSQEVVATLSAMIDNGSIKPGEKLPTESEIMQTQGVSRT 58
           MDV  TP  +P L PR + Q L   VV  L  +I  G + PG KL  E E+ +  G+SRT
Sbjct: 6   MDVG-TPMTSPDL-PRMERQRLHDAVVEHLQRLIIEGVLTPGMKL-NEREVCERLGISRT 62

Query: 59  VVREAISRLQAAGLVETRHGIGTFVLEAKKGSNINIDPATITTMRDLLALLELRISLETE 118
            +REA+  L + GL++     G FV    K ++  I  A            E+   LE  
Sbjct: 63  PLREAMKVLASEGLIDIVPNRGAFV---SKMNDTEIWEA-----------FEMMSGLEAL 108

Query: 119 TAGLAAARRSEEQLQEIR---EALNLFRENQQNGGDTVGPDFRFHFAIANATGNRYFIEI 175
           +  LAA R S  ++ +I+   +A+ + R      G     +   H  I  A  N    +I
Sbjct: 109 SGELAAERISPAEIADIKVLHQAMLVCRAQNDLPG-YYSRNQTIHNKINEAARNSMLRQI 167

Query: 176 ISHLGMGVIPRKRINTAELAHDQQSSYLDRVQREHEDIFDAIARGDSEAARAAMRNHLTN 235
              +       +R+       + +    DR   EH+++  A+   D +     +R HL +
Sbjct: 168 YLSVN------RRLLALRFKSNFKEEKWDRAINEHDEMIQALEARDGKRLAGILRQHLLD 221

Query: 236 SRERLRRAQQEAE--SGATTGA 255
            R+ +    ++A   +GAT  A
Sbjct: 222 KRDSVMADLRDASNRAGATAAA 243


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.130    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 499,011
Number of extensions: 18437
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 255
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 174
Effective length of database: 921,564
Effective search space: 160352136
Effective search space used: 160352136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)