BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3111.p
         (164 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981590|ref|YP_001352941.1| iron-sulfur cluster assembly tr...   262   7e-72

>gi|152981590|ref|YP_001352941.1| iron-sulfur cluster assembly
           transcription factor [Janthinobacterium sp. Marseille]
          Length = 157

 Score =  262 bits (670), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 128/163 (78%), Positives = 139/163 (85%), Gaps = 7/163 (4%)

Query: 1   MRLTTKGRFAVTAMIDLALRQGKGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRG 60
           MRLTTKGRFAVTAMIDLALRQ  GPVTL+ IS+RQEISLSYLEQLFGKLRRH+IVESVRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQDNGPVTLAGISQRQEISLSYLEQLFGKLRRHEIVESVRG 60

Query: 61  PGGGYNLARKAADVSVADIIIAVDEPLDATQCGGKENCHSAAHPGGARCMTHELWSTLNE 120
           PGGGYNLAR+A DV+VADIIIAVDEPLDATQCGGKENCHS  H  G RCMTH+LW+TLN 
Sbjct: 61  PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKENCHSPEHEHGGRCMTHDLWATLNA 120

Query: 121 KMVEYLDSVSLQDLVDQQKEPKPVEHRAADSQSVVVLHRPQAA 163
           KMV+YLDSVSL+DLVDQQK+           Q VVV+HR  AA
Sbjct: 121 KMVDYLDSVSLKDLVDQQKQK-------ISEQCVVVVHRNHAA 156


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 343,100
Number of extensions: 11428
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 88
Effective length of database: 940,049
Effective search space: 82724312
Effective search space used: 82724312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)