BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3110.p
         (417 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980888|ref|YP_001352942.1| cysteine desulfurase [Janthinob...   798   0.0  
gi|152980945|ref|YP_001354225.1| selenocysteine lyase [Janthinob...    95   8e-21

>gi|152980888|ref|YP_001352942.1| cysteine desulfurase
           [Janthinobacterium sp. Marseille]
          Length = 417

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/417 (89%), Positives = 400/417 (95%)

Query: 1   MNAPLEKSLLETIKAPHFPIYMDYSATTPVDPRVADKMIPYLREQFGNPASRSHMYGWTA 60
           MNAPL+KSL++TIKAPHFPIYMDYSATTP+DPRVADKMIPYLREQFGNPASRSHMYGWTA
Sbjct: 1   MNAPLDKSLIDTIKAPHFPIYMDYSATTPIDPRVADKMIPYLREQFGNPASRSHMYGWTA 60

Query: 61  EKAVEEAREEVAKLVNADSREIIWTSGATESNNLAIKGAAQFYKSKGKHIITVKTEHKAV 120
           EKAVE+ARE+VA LVNAD REIIWTSGATE NNLA+KGAAQFYK+KGKHIITVKTEHKAV
Sbjct: 61  EKAVEDAREQVAALVNADPREIIWTSGATEGNNLALKGAAQFYKTKGKHIITVKTEHKAV 120

Query: 121 LDTFRELERVGFEATYLQPQDNGLVTVEQIAAALRPDTILVSVMLVNNEIGVIQPVPEIG 180
           LDT RELER GFEATYLQPQDNGL+T+EQ+A A+RPDTILVSVMLVNNEIGVIQP+ EIG
Sbjct: 121 LDTVRELERQGFEATYLQPQDNGLITIEQLAEAIRPDTILVSVMLVNNEIGVIQPIDEIG 180

Query: 181 ELCRSKGIIFHCDAAQATGKVKIDLENWKVDLMSFSAHKTYGPKGIGALYVRRKPRVRIE 240
           ELCRSKGIIFHCDAAQATGKVKIDLE  KVDLM+F+AHKTYGPKGIGALYVRRKPRVRIE
Sbjct: 181 ELCRSKGIIFHCDAAQATGKVKIDLEKSKVDLMTFTAHKTYGPKGIGALYVRRKPRVRIE 240

Query: 241 AQMHGGGHERGLRSGTLATHQIVGMGEAFRIAREEMDSELARIRALRDRLAKGLQEIEET 300
           AQMHGGGHERGLRSGTLATHQIVGMGEAFRIAREEMD E+ RI+ LRDRLAKGL ++EE 
Sbjct: 241 AQMHGGGHERGLRSGTLATHQIVGMGEAFRIAREEMDEEIVRIKGLRDRLAKGLMDMEEV 300

Query: 301 YINGDMEHRVPHNLNVSFNYVEGESLIMAIKDIAVSSGSACTSASLEPSYVLRALGRSDE 360
           YINGDM+HRVPHNLNVSFNYVEGESLIMAIKD+AVSSGSACTSASLEPSYVLRALGRSDE
Sbjct: 301 YINGDMDHRVPHNLNVSFNYVEGESLIMAIKDLAVSSGSACTSASLEPSYVLRALGRSDE 360

Query: 361 LAHSSIRFTIGRFTTEEDIDFTIELIKSKVGKLRELSPLWDMYKDGVDLSTIQWAAH 417
           LAHSSIRFT GRFTTEED+DFTI+LIK KV KLRELSPLWDMYKDG+D+STIQWAAH
Sbjct: 361 LAHSSIRFTFGRFTTEEDVDFTIKLIKEKVNKLRELSPLWDMYKDGIDISTIQWAAH 417


>gi|152980945|ref|YP_001354225.1| selenocysteine lyase
           [Janthinobacterium sp. Marseille]
          Length = 653

 Score = 95.1 bits (235), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 2/217 (0%)

Query: 20  IYMDYSATTPVDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEEAREEVAKLVNA-D 78
           ++ D +ATT     V D++  +   +  N    +H     A  A E AR+ V   +NA D
Sbjct: 268 VWFDNAATTHKPQSVIDRIAYFYEHENSNIHRAAHELAARATDAYEGARQRVKNFINAPD 327

Query: 79  SREIIWTSGATESNNLAIKGAAQFYKSKGKHIITVKTEHKAVLDTFRELERV-GFEATYL 137
             E+I+  G TE+ NL  K     +  +G  II    EH A +  +++L    G +   +
Sbjct: 328 VNEVIFVRGTTEAINLVAKSWGGQHVGEGDEIIVSNLEHHANIVPWQQLAAAKGAKLRVI 387

Query: 138 QPQDNGLVTVEQIAAALRPDTILVSVMLVNNEIGVIQPVPEIGELCRSKGIIFHCDAAQA 197
              D+G V + +    L   T +V+V  V+N +G + PV EI  L    G     D AQ+
Sbjct: 388 PVDDSGQVILSEYQKLLNDRTKIVAVTQVSNALGTVVPVKEIVALAHRAGAKALVDGAQS 447

Query: 198 TGKVKIDLENWKVDLMSFSAHKTYGPKGIGALYVRRK 234
              +++D+++   D   FS HK +GP GIG ++ +R+
Sbjct: 448 ISHMRVDVQDIGADFFVFSGHKVFGPTGIGVVWGKRE 484


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 897,727
Number of extensions: 33891
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 417
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 331
Effective length of database: 903,079
Effective search space: 298919149
Effective search space used: 298919149
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)