BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3108.p
         (107 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981602|ref|YP_001352944.1| [Fe-S] cluster formation/repair...   210   2e-56
gi|152981570|ref|YP_001351989.1| iron-sulfur cluster insertion p...    66   6e-13

>gi|152981602|ref|YP_001352944.1| [Fe-S] cluster formation/repair
           protein [Janthinobacterium sp. Marseille]
          Length = 107

 Score =  210 bits (534), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 99/107 (92%), Positives = 104/107 (97%)

Query: 1   MAITLTEKAAKHISRYMERRGKGIGLRLGVRTTGCSGLAYKLEYVDEQAAEDTVFESHGV 60
           MAITLTEKAAKHI+RYMERRGKGIGLR GVRTTGCSGLAYKLEYVDE A ED+VFESHG+
Sbjct: 1   MAITLTEKAAKHITRYMERRGKGIGLRFGVRTTGCSGLAYKLEYVDESANEDSVFESHGI 60

Query: 61  RVFVDPKSLPYIDGTELDFAREGLNEGFKFQNPNVKDECGCGESFRI 107
           +VFVDPKSLPYIDGTELDFAREGLNEGFKF+NPNVKDECGCGESFRI
Sbjct: 61  KVFVDPKSLPYIDGTELDFAREGLNEGFKFRNPNVKDECGCGESFRI 107


>gi|152981570|ref|YP_001351989.1| iron-sulfur cluster insertion
           protein ErpA [Janthinobacterium sp. Marseille]
          Length = 116

 Score = 65.9 bits (159), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 3   ITLTEKAAKHISRYMERRGK-GIGLRLGVRTTGCSGLAYKLEYVDEQAAEDTVFESHGVR 61
           I  ++ AA  ++  +E  G   + LR+ V+  GCSG  Y   + +    +DT    +GV+
Sbjct: 11  IVFSDSAAMKVAELIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMTKNGVQ 70

Query: 62  VFVDPKSLPYIDGTELDFAREGLNEGFKFQNPNVKDECGCGESFR 106
           + +D  S  Y+ G E+D+  +     F  +NPN    CGCG SF 
Sbjct: 71  LLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFS 115


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 247,235
Number of extensions: 9089
Number of successful extensions: 17
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 37
Effective length of database: 962,231
Effective search space: 35602547
Effective search space used: 35602547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)