BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3106.p
         (208 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981789|ref|YP_001352259.1| homoserine/homoserine lactone e...    80   9e-17

>gi|152981789|ref|YP_001352259.1| homoserine/homoserine lactone
           efflux protein [Janthinobacterium sp. Marseille]
          Length = 214

 Score = 80.1 bits (196), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 9/199 (4%)

Query: 7   FLLAAMTLTLAPGPDNLYVLTRGVAQGRQAGLVAAAGFCSGLIFHTLLAVLGFAALIKAY 66
           FL+AA+ + + PG   +  ++ G++ G +    +  G   GLIF   +A  G  +L+ A 
Sbjct: 9   FLIAAILIAITPGSGAILSMSHGLSYGVRKTTASILGLQLGLIFLLTVAGAGVGSLLLAS 68

Query: 67  APAYHALQYAGAAYLAYLGVRTLRSASAGIALAADGQGMSA---VP-LRRIYWQSVLANM 122
             A++ ++  GA YL YLG+   R   A + LA + Q   A   VP  ++ +   +L N+
Sbjct: 69  EMAFNIVKTIGAFYLIYLGLSQWR---AKVVLAPEMQAQHARTIVPTFKKRFLHGLLTNV 125

Query: 123 LNPKVTLFFIAFLPQFVRREAGHEALQMLVLALLFIVQAFVIFSAIALFSGSVGAYFRRR 182
            NPK  +F +A LPQF+ ++A     Q+L+L +   V   ++  A A  + S+  +F R 
Sbjct: 126 TNPKGVIFMVAVLPQFIVKDAPLLP-QLLILGVTICVIDIIVMHAYAFAASSMQRFF-RD 183

Query: 183 ATASVHLNRLAGCAFIGLG 201
           ATA    NR  G  FI +G
Sbjct: 184 ATAVKKQNRFFGSLFIAIG 202


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.331    0.142    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 384,418
Number of extensions: 13041
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 129
Effective length of database: 928,958
Effective search space: 119835582
Effective search space used: 119835582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)