BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3105.p (621 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981263|ref|YP_001352946.1| chaperone protein HscA [Janthin... 1036 0.0 gi|152980512|ref|YP_001354573.1| molecular chaperone DnaK [Janth... 433 e-122 gi|152980843|ref|YP_001353994.1| Hsp70/DnaK family protein [Jant... 83 6e-17 >gi|152981263|ref|YP_001352946.1| chaperone protein HscA [Janthinobacterium sp. Marseille] Length = 620 Score = 1036 bits (2679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 515/620 (83%), Positives = 568/620 (91%) Query: 1 MALLQISEPGMSTAPHQRRLAVGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSIVRYL 60 MALLQI+EPGMSTAPHQ RLAVGIDLGTTNSLVATVRNSIPEVL D++GR LLPS+V Y+ Sbjct: 1 MALLQIAEPGMSTAPHQHRLAVGIDLGTTNSLVATVRNSIPEVLTDEEGRALLPSVVHYM 60 Query: 61 PNGHANIGYKAQAAQTIDPRNTIVSVKRFMGRGLKDIAHAENMPYDFQDQPGMVQIKTVA 120 NGHA IGYKA AAQ DP+NTI SVKRFMGRGLKDIA+ EN+PYDF D PGMVQ+KTVA Sbjct: 61 KNGHAQIGYKALAAQNTDPKNTIASVKRFMGRGLKDIAYVENLPYDFLDTPGMVQLKTVA 120 Query: 121 GVKSPVEVSAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLR 180 GVKSPVE+SA+ILATLRQ AEDALGD+LVGAVITVPAYFDDAQRQATKDAA+LAGLNVLR Sbjct: 121 GVKSPVEISAEILATLRQQAEDALGDELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLR 180 Query: 181 LLNEPTAAAIAYGLDNASEGIFAVYDLGGGTFDISILKLTRGVFEVLATGGDSALGGDDF 240 LLNEPTAAAIAYGLDN SEG+FAVYDLGGGTFD+SILKLT+GVFEVL+TGGDSALGGDDF Sbjct: 181 LLNEPTAAAIAYGLDNGSEGVFAVYDLGGGTFDVSILKLTKGVFEVLSTGGDSALGGDDF 240 Query: 241 DHRLFCWISQQAQLQPLSDEDTRLLMVKAREVKELLSTKDEVQIDAALKSGEQVHLSITA 300 DHRL CWI +QA+L PLSDED +LMVK+RE KELLSTK E IDAAL SGE+VHL++TA Sbjct: 241 DHRLLCWIIEQAKLSPLSDEDLSVLMVKSREAKELLSTKAETHIDAALGSGEEVHLTVTA 300 Query: 301 AQFNEITQHLVAKTMTPVRKALRDAGLTVEDVDGVVLVGGATRMPHIRRAVGEFFKTNPL 360 A F ++TQHLVAKT+TP +KALRDA LTV+DVDGVV+VGGATRMPHIR+AVGEFF+ PL Sbjct: 301 ADFVKMTQHLVAKTITPTKKALRDADLTVDDVDGVVMVGGATRMPHIRKAVGEFFQATPL 360 Query: 361 SNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIPRNSTIP 420 +NIDPDKVVALGAAVQANLLAGNRA GDDWLLLDVIPLSLGIETMGGL EKVIPRNSTIP Sbjct: 361 ANIDPDKVVALGAAVQANLLAGNRAAGDDWLLLDVIPLSLGIETMGGLVEKVIPRNSTIP 420 Query: 421 CARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTYQVD 480 CARAQEFTTFKDGQTAMAIH+VQGERELV+DCRSLARFELRGIPPMAAGAARIRVTYQVD Sbjct: 421 CARAQEFTTFKDGQTAMAIHIVQGERELVSDCRSLARFELRGIPPMAAGAARIRVTYQVD 480 Query: 481 ADGLLAVSAREMTSGVEASITVKPSYGLGDDEIARMLQESFSSADEDMQRRALREEQVEA 540 ADGLL+VSARE+ SGVEASI+VKPSYGL DD+IA+MLQ+SF SAD DM RALREEQVEA Sbjct: 481 ADGLLSVSARELRSGVEASISVKPSYGLADDQIAQMLQDSFKSADVDMALRALREEQVEA 540 Query: 541 ERIVLATRSALQADAALLSEDERVAIEAQIEAVTAAAQGSDHLAIKAAVDALAHGTEEFA 600 ERIVLAT+SAL AD ALL++DER A+ + + AV +++G DH AIKAAV+ALA GTEEFA Sbjct: 541 ERIVLATQSALDADGALLTDDERNAVTSLLAAVQQSSKGDDHHAIKAAVEALAQGTEEFA 600 Query: 601 ARRMDRSVHAALAGKKLDEV 620 ARRMDRSV AL+GKKLDE+ Sbjct: 601 ARRMDRSVRTALSGKKLDEI 620 >gi|152980512|ref|YP_001354573.1| molecular chaperone DnaK [Janthinobacterium sp. Marseille] Length = 650 Score = 433 bits (1113), Expect = e-122, Method: Compositional matrix adjust. Identities = 252/591 (42%), Positives = 372/591 (62%), Gaps = 37/591 (6%) Query: 22 VGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSIVRYLPNGHANIGYKAQAAQTIDPRN 81 +GIDLGTTNS VA + P+V+ + +G PS++ Y +G +G A+ +P+N Sbjct: 5 IGIDLGTTNSCVAIMEGGKPKVIENSEGARTTPSVIAYQEDGEILVGAPAKRQAVTNPKN 64 Query: 82 TIVSVKRFMGRGL------KDIAHAENMPY-----DFQDQPGMVQIKTVAGVKSPVEVSA 130 T+ +VKR +GR KDI MPY D D V+ K +A ++SA Sbjct: 65 TLYAVKRLIGRKFDEKEVQKDIGM---MPYQIVKADNGDAWISVRDKKLAAQ----QISA 117 Query: 131 QILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLRLLNEPTAAAI 190 +IL +++TAED LG+++ AVITVPAYF+DAQRQATKDA ++AGL+V R++NEPTAAA+ Sbjct: 118 EILRKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAAL 177 Query: 191 AYGLDNASEG--IFAVYDLGGGTFDISILKLT----RGVFEVLATGGDSALGGDDFDHRL 244 A+GLD +G AVYDLGGGTFDISI+++ FEVL+T GD+ LGG+DFD R+ Sbjct: 178 AFGLDKGGKGDRKIAVYDLGGGTFDISIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRI 237 Query: 245 FCWISQQAQL---QPLSDEDTRLLMVKA--REVKELLSTKDEVQIDA---ALKSGEQVHL 296 +I + + LS + L +KA K LS+ + +I+ A+ +G VHL Sbjct: 238 IDYIIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHL 297 Query: 297 S--ITAAQFNEITQHLVAKTMTPVRKALRDAGLTVEDVDGVVLVGGATRMPHIRRAVGEF 354 + IT A+ + + L++KT+ P R A++DAG+ V D+D ++LVGG TRMP ++ V +F Sbjct: 298 NLKITRAKLESLVEELISKTIEPCRTAIKDAGVKVSDIDDIILVGGMTRMPKVQETVKDF 357 Query: 355 FKTNPLSNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIP 414 F +P +++PD+ VA+GAA+Q ++L+G+R D LLLDV PLSLGIET+GG+ K+I Sbjct: 358 FGKDPRKDVNPDEAVAVGAAIQGSVLSGDRK---DLLLLDVTPLSLGIETLGGVMTKMIQ 414 Query: 415 RNSTIPCARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIR 474 +N+TIP +Q F+T D Q A+ I V QGERE+ ++L F L GIPP A G +I Sbjct: 415 KNTTIPTKFSQVFSTADDNQPAVTIKVFQGEREMAVGNKALGEFNLEGIPPSARGTPQIE 474 Query: 475 VTYQVDADGLLAVSAREMTSGVEASITVKPSYGLGDDEIARMLQESFSSADEDMQRRALR 534 VT+ +DA+G+L V A++ +G E IT+K + GL ++EI +M+Q++ ++A+ED + + L Sbjct: 475 VTFDIDANGILHVGAKDKATGKENKITIKANSGLTEEEIQKMVQDAEANAEEDKRLKELA 534 Query: 535 EEQVEAERIVLATRSALQADAALLSEDERVAIEAQIEAVTAAAQGSDHLAI 585 E + + +V +TR AL L E+ IEA I + A +GSD AI Sbjct: 535 EAHNQGDALVHSTRKALTEYGDKLEAGEKEKIEAAIAELEEALKGSDKAAI 585 >gi|152980843|ref|YP_001353994.1| Hsp70/DnaK family protein [Janthinobacterium sp. Marseille] Length = 416 Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 111/422 (26%), Positives = 164/422 (38%), Gaps = 112/422 (26%) Query: 21 AVGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSIVRYLPNGHANIGYKAQAA-----Q 75 A G+D GT+NS V R +L +DG+V LPS+V + N Y +AA Q Sbjct: 4 ACGVDFGTSNSTVGWSRPGHSALLQLEDGKVTLPSVVFF--NADEEQVYYGRAALANYLQ 61 Query: 76 TIDPRNTIVSVKRFMGRGLKDIAHAENMPYDFQDQPGMVQIKTVAGVKSPVE-VSAQILA 134 + R + S+K +G L D DQ V G P + Q +A Sbjct: 62 GYEGR-LMRSLKSLLGTSLID------------DQT------EVMGKALPFRTLLTQFIA 102 Query: 135 TLRQTAEDALGDDLVGAVITVPAYFDDAQRQA-------TKDAAQLAGLNVLRLLNEPTA 187 L+ AE A G + V+ P YF D +A + AQ G + EP A Sbjct: 103 ELKHRAETAAGREFSSVVMGRPVYFVDGNEEADILAEDTLYEIAQSVGFKDIDFQYEPIA 162 Query: 188 AAIAYGLDNASEGIFAVYDLGGGTFDISILKLT----RGV---FEVLATGGDSALGGDDF 240 AA Y E + + D+GGGT D S+++L+ + V ++LATGG +GG DF Sbjct: 163 AAFDYESQIDKEELVLIADIGGGTSDFSLVRLSPERAKKVDRRDDILATGG-IHIGGTDF 221 Query: 241 D-----------------------------HRLFCW------ISQQAQLQP--------- 256 D L W +Q+A LQ Sbjct: 222 DKYLSLTSIMPLLGLGSRLNNNTEVPSSYYFNLATWHTINLAYTQKAWLQIKDIYRDARD 281 Query: 257 ----------LSDEDTRLLMVKAREVKELLST--KDEVQIDAALKSGEQVHLSITAAQFN 304 + + L +KA E K LS+ + E+ +D + L++ +F+ Sbjct: 282 KTKLDSLLHLIENRSGHWLALKAEEGKIALSSALETELLLD---RIAPSTTLTLRRDEFD 338 Query: 305 EITQHLVAKTMTPVRKALRDAGLTVEDVDGVVLVGG-----------ATRMPHIRRAVGE 353 +V+ V L+DAG+ EDVD VV GG ++ +P RR G+ Sbjct: 339 NAIDKMVSSVEGTVANLLKDAGIAAEDVDTVVFTGGSSGVQLLREKISSLLPDARRVEGD 398 Query: 354 FF 355 F Sbjct: 399 LF 400 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,341,240 Number of extensions: 55178 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 222 Number of HSP's successfully gapped: 3 Length of query: 621 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 532 Effective length of database: 891,988 Effective search space: 474537616 Effective search space used: 474537616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)