BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3100.p (242 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981623|ref|YP_001352308.1| positive response regulator for... 103 1e-23 gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding respons... 102 3e-23 gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding respons... 91 8e-20 gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding respons... 88 4e-19 gi|152981487|ref|YP_001352450.1| LuxR family DNA-binding respons... 82 3e-17 >gi|152981623|ref|YP_001352308.1| positive response regulator for colanic capsule biosynthesis [Janthinobacterium sp. Marseille] Length = 216 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 111/228 (48%), Gaps = 28/228 (12%) Query: 8 KMRIALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPADLLLIDYSLGSN 67 K + L DDH ++ GL + ++ F ++GA ++S L++ +R D+++ DYS+ + Sbjct: 3 KQTVILADDHPLILMGLRDLVEKDASFELLGAVSSSTALVSLMRDAEPDMVITDYSMPGD 62 Query: 68 DI--DGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSELILAIR 125 + DG+ +I+ L FP +KIL + S+P + AG + KS + +E I A+ Sbjct: 63 ETYGDGIRMIKYLIRHFPNTKILTMTMMSNPMIISALYDAGVYAVIRKSDDPAEFIAALH 122 Query: 126 AIHTGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPN-LSP 184 + GR+Y PP ++ + + + N LSP Sbjct: 123 ILRLGRKYY-------------------------PPSFQKESKANERTKFIGERINSLSP 157 Query: 185 REREVLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGVRSDNEL 232 +E EVLR + G + +A RS+KT+S QK +A KL V++D EL Sbjct: 158 KEFEVLRYFIQGKPIMQVALHLNRSIKTVSGQKIAAMHKLNVKTDQEL 205 >gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 215 Score = 102 bits (253), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 121/241 (50%), Gaps = 30/241 (12%) Query: 1 MTWKVGSKMRIALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPADLLLI 60 MT K K+ IA DDHA+VR GL + LA+ D V G E + R +LL+ Sbjct: 1 MTTKNVIKVLIA--DDHAIVREGLKQILADTKDIVVAGHAENGIEAIKLSREGACQVLLL 58 Query: 61 DYSLGSNDIDGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSEL 120 D S+ D G+ +++ ++ P+ +L+ S H + ++KAGA G++ K +EL Sbjct: 59 DISMP--DRSGIEVLKQVKKESPKIAVLMLSMHREDQYAIRSLKAGASGYLNKQSAPAEL 116 Query: 121 ILAIRAIHTGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMP 180 + AIR + GR+Y+S A+++ELA Q +D + P +TLSD Sbjct: 117 VNAIRQVAAGRKYISAALAQELAN-QISDD-----------------HETPLHETLSD-- 156 Query: 181 NLSPREREVLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGVRSDNELFKIEYQIK 240 RE + L G +V+DIA + SVKTIS + +K+ +R + EL Y IK Sbjct: 157 ----REYQTLTMIASGKTVSDIANELVLSVKTISMYRSRLLQKMKLRHNAEL--THYAIK 210 Query: 241 D 241 + Sbjct: 211 N 211 >gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 210 Score = 90.5 bits (223), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 28/232 (12%) Query: 9 MRIALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPADLLLIDYSLGSND 68 ++I ++DDHAVVR G+ +A+ PD + G AT++E + +RA+ D++L+D ++ D Sbjct: 2 IKILVVDDHAVVRAGVQYFIAQVPDMKIEGEAATAQEAIRLVRAQDWDIVLLDINMP--D 59 Query: 69 IDGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSELILAIRAIH 128 G+ +++ ++ P +L+ S H V +++GA G+V K EL+ AI+ I Sbjct: 60 KSGVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVNAIQTIL 119 Query: 129 TGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPNLSPRERE 188 G +Y+ S +A L + +E P +T LS RE E Sbjct: 120 RGHKYI----SHTVAELLTTELDTSTE--------------KPLHET------LSKREYE 155 Query: 189 VLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGVRSDNELFKIEYQIK 240 + G VT IA++ SVKT+S + +K+ + +N I Y IK Sbjct: 156 IFYKLCQGHGVTKIADELCLSVKTVSTYRARVLQKMNM--ENNAGIIYYAIK 205 >gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 214 Score = 88.2 bits (217), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 26/216 (12%) Query: 9 MRIALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPADLLLIDYSLGSND 68 ++I + DDHA++R GL + ++ + +V G + +E++ LR+ D+L++D S+ Sbjct: 2 IQILIADDHAIIRDGLKQIISFVSNMAVAGEASNGEEVLQKLRSLQVDVLVLDMSMPGRS 61 Query: 69 IDGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSELILAIRAIH 128 G+ LI+ + P ILV S H V AM+AGA G++ K+ S+LI IR + Sbjct: 62 --GIALIQQINAIKPDLPILVLSMHQESQYAVQAMRAGASGYITKNTASSQLIEGIRKVA 119 Query: 129 TGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPNLSPRERE 188 G ++S +S +L +PE P + L+ RE + Sbjct: 120 EGGTFVSPEISAKLIK-------QLHKPETDLPHTK-----------------LTAREFQ 155 Query: 189 VLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKL 224 + ++G SV DIA+ + S KTIS K + +K+ Sbjct: 156 IFSMLVEGHSVNDIAKILSLSNKTISTHKAAVLQKM 191 >gi|152981487|ref|YP_001352450.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 213 Score = 82.0 bits (201), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 96/217 (44%), Gaps = 28/217 (12%) Query: 11 IALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPA-DLLLIDYSLGSNDI 69 + L+DDHA+ R GL L + I A+ E + L E + ++DY L DI Sbjct: 4 VLLIDDHAMFREGLTLALTQADPTLQIHCVASGNEALQLLETETSISTAMMDYYL--PDI 61 Query: 70 DGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSELILAIRAIHT 129 G L++ LR P +IL SA P V A+ +GA GF+ KS + L A+ ++ Sbjct: 62 GGGALLQRLRQLRPGLRILALSASEDPDDVRHALASGAHGFIHKSADSKTLFAALSSVMQ 121 Query: 130 GREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPNLSPREREV 189 GR YL PP + + S+D S + L+PR+ EV Sbjct: 122 GRGYL-------------------------PPTFKLDTHDGGSNDDASLLSRLTPRQMEV 156 Query: 190 LRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGV 226 LR DGL +IA++ + KT+ + LGV Sbjct: 157 LRLMCDGLRNGEIADQLGMTEKTVKAHVSAVLSGLGV 193 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 440,401 Number of extensions: 14465 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 9 Length of query: 242 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 161 Effective length of database: 921,564 Effective search space: 148371804 Effective search space used: 148371804 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)