BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3099.p (235 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982336|ref|YP_001352548.1| hypothetical protein mma_0858 [... 84 8e-18 gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthi... 59 3e-10 gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and... 56 2e-09 gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/re... 54 7e-09 >gi|152982336|ref|YP_001352548.1| hypothetical protein mma_0858 [Janthinobacterium sp. Marseille] Length = 485 Score = 84.0 bits (206), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 14/213 (6%) Query: 9 RVLLVDDSATIRYAMQNRLQMLGCQVDCVADGGSALAAIQAQSYGMVLLDCFLPDMPGPE 68 RVL VDD+ + L GCQVD +DG AL + + Y ++L+DC +P+M G + Sbjct: 234 RVLAVDDNPVNLQIAERMLARFGCQVDTASDGQQALRMVHVRHYDLILMDCQMPNMDGYQ 293 Query: 69 VARQVRLLEQHDSTRSYTPLIGISAEADATHVQRCLDSGMDGTLDKPLQTVAIRRLLALW 128 +R E D + P+IG S+ + + CL GMD + KP++ + +L+ W Sbjct: 294 TTALLRAAETGD---EHVPIIGWSSGVNRSERDTCLAIGMDDFIFKPIRMRPLSDMLSRW 350 Query: 129 CDHESGEDGAPATAEE-EHSQ--------DLARLFIQTAQSDLQALQQASVMGDAARLGQ 179 S E ++ E +Q +L LF+ + L +A + DA + + Sbjct: 351 LKPASTERSMVRNDDDLEATQAMFGADFAELVDLFLTDSPKRFVFLHEAILANDALTVAK 410 Query: 180 LTHRMKGAALTMGRAEIVALLECVEEALRADTD 212 H + G+ ++G + AL C E +RA + Sbjct: 411 FAHVLCGSTSSIGATTLAAL--CRELEIRAKNN 441 >gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille] Length = 132 Score = 58.5 bits (140), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 7/124 (5%) Query: 6 SGP--RVLLVDDSATIRYAMQNRLQMLG-CQVDCVADGGSALAAIQAQSYGMVLLDCFLP 62 +GP + L+VDD +T+R ++N L+ LG VD DG ALA ++++ + V+ D +P Sbjct: 2 AGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGAMALAKLRSEQFDFVVSDWNMP 61 Query: 63 DMPGPEVARQVRLLEQHDSTRSYTPLIGISAEADATHVQRCLDSGMDGTLDKPLQTVAIR 122 +M G + + +R D S P++ ++AEA ++ +G +G + KP + Sbjct: 62 NMDGLTMLQHIR----ADPALSKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLD 117 Query: 123 RLLA 126 LA Sbjct: 118 EKLA 121 >gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 1901 Score = 55.8 bits (133), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 4/117 (3%) Query: 10 VLLVDDSATIRYAMQNRLQMLGCQVDCVADGGSALAAIQAQSYGMVLLDCFLPDMPGPEV 69 V++VDDS T+R Q L G QV DG AL +Q+ + ++L+D +P M G ++ Sbjct: 1779 VMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQSVTPDVMLVDIEMPRMDGFDL 1838 Query: 70 ARQVRLLEQHDSTRSYTPLIGISAEADATHVQRCLDSGMDGTLDKPLQTVAIRRLLA 126 R +R + TR P+I I++ + H ++ G++ L KP Q + L+A Sbjct: 1839 TRNIR---DDERTRD-IPIIMITSRTASKHRNYAMELGVNEYLGKPYQEDVLLELIA 1891 >gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 702 Score = 54.3 bits (129), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 3/109 (2%) Query: 9 RVLLVDDSATIRYAMQNRLQMLGCQVDCVADGGSALAAIQAQSYGMVLLDCFLPDMPGPE 68 R+LL +D+ + L+ G V+ +G A+ A+Q + +VL+D +P+M G Sbjct: 581 RILLAEDNEINQKVAATLLKKAGHTVEIAQNGLEAVQAVQNSVFDVVLMDMHMPEMDGLA 640 Query: 69 VARQVRLLEQHDSTRSYTPLIGISAEADATHVQRCLDSGMDGTLDKPLQ 117 R +R + +T P++ ++A + +Q C+D+GM+ L KP + Sbjct: 641 ATRAIRNMSGPAAT---LPIVALTAAGALSDIQICMDAGMNYFLVKPFR 686 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.131 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 462,183 Number of extensions: 16977 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 4 Length of query: 235 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 155 Effective length of database: 925,261 Effective search space: 143415455 Effective search space used: 143415455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)