BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3097.p
         (471 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979825|ref|YP_001352768.1| glutamine synthetase [Janthinob...   922   0.0  

>gi|152979825|ref|YP_001352768.1| glutamine synthetase
           [Janthinobacterium sp. Marseille]
          Length = 471

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/471 (92%), Positives = 455/471 (96%)

Query: 1   MARTAAEVLKMVKDNEVKFVDFRFADTRGKEQHVSVPVSHFDIDKFESGHAFDGSSIAGW 60
           MA TAAEVLKM KDNEVKFVDFRFADTRGKEQHV+VP+SHFD+DKFESGHAFDGSSIAGW
Sbjct: 1   MAMTAAEVLKMAKDNEVKFVDFRFADTRGKEQHVTVPISHFDMDKFESGHAFDGSSIAGW 60

Query: 61  KGIEASDMLLIPDPNTANIDPFMEETTLFMQCDVIEPSDGKGYDRDPRSIAKRAEAYLKS 120
           KGIEASDMLL+PDPNTANIDPF EETTLFMQCDVIEPSDGKGYDRDPRSIAKRAEAYLKS
Sbjct: 61  KGIEASDMLLMPDPNTANIDPFFEETTLFMQCDVIEPSDGKGYDRDPRSIAKRAEAYLKS 120

Query: 121 SGLGDTAYFGPEPEFFIFDGVRWGADMSGSFVKIESEEASWSTGAEIEGGNSGHRPTVKG 180
           SGLGDTAYFGPEPEFFIFDG+RW   M G FVKI+SEEA+WS+G ++EGGN+GHRP VKG
Sbjct: 121 SGLGDTAYFGPEPEFFIFDGIRWKIGMDGCFVKIDSEEAAWSSGEKLEGGNTGHRPAVKG 180

Query: 181 GYFPVPPVDSFQDMRSEMSLILESLGIPVEVHHHEVAGAGQNELGTKFSTLVERADWTQT 240
           GYFPVPPVDSFQDMRSEMSLILESLGIPVEVHHHEVAG GQNELGTKFSTLVERADWTQ 
Sbjct: 181 GYFPVPPVDSFQDMRSEMSLILESLGIPVEVHHHEVAGPGQNELGTKFSTLVERADWTQN 240

Query: 241 LKYVIWNVAHTYGKTATFMPKPLVGDNGSGMHVHQSVWKDGKNLFAGDGYAGLSEFALYY 300
           LKYV+WNVAHTYGKTATFMPKP+VGDNGSGMHVHQSVWKDGKNLFAGDGYAGLS+FALYY
Sbjct: 241 LKYVVWNVAHTYGKTATFMPKPIVGDNGSGMHVHQSVWKDGKNLFAGDGYAGLSDFALYY 300

Query: 301 IGGIIKHAKALNAITNPGTNSYKRLVPGFEAPVKLAYSARNRSASIRIPHVANPKGRRIE 360
           IGGIIKHAKALNAITNPGTNSYKRLVPGFEAPVKLAYSARNRSASIRIPHVANPKGRR+E
Sbjct: 301 IGGIIKHAKALNAITNPGTNSYKRLVPGFEAPVKLAYSARNRSASIRIPHVANPKGRRVE 360

Query: 361 TRFPDPLANPYLCFSALLMAGLDGVQNKIHPGEAATKDLYHLPPEEDKLIPTVCASLDEA 420
            RFPDPLANPYLCFSALLMAGLDGVQNKIHPGEAA+KDLYHLPPEED LIPTVC SL+EA
Sbjct: 361 ARFPDPLANPYLCFSALLMAGLDGVQNKIHPGEAASKDLYHLPPEEDALIPTVCVSLEEA 420

Query: 421 LEHLDKDREFLTRGGVFTDSMIDAYIELKMQEVQRFRMTTHPIEFDMYYSL 471
           LEHL+KDREFLTRGGVF+DSMIDAYIELKMQEVQRFRMT HP+E+DMYYSL
Sbjct: 421 LEHLNKDREFLTRGGVFSDSMIDAYIELKMQEVQRFRMTAHPVEYDMYYSL 471


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,192,758
Number of extensions: 53730
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 384
Effective length of database: 899,382
Effective search space: 345362688
Effective search space used: 345362688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)