BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3096.p (366 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980593|ref|YP_001352770.1| nitrogen regulation (sensor pro... 581 e-167 gi|152981064|ref|YP_001351846.1| two component sensor histidine ... 92 3e-20 gi|152982315|ref|YP_001354919.1| two component sensor histidine ... 69 4e-13 gi|152982333|ref|YP_001354112.1| two-component sensor histidine ... 69 6e-13 gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 63 3e-11 >gi|152980593|ref|YP_001352770.1| nitrogen regulation (sensor protein kinase) transcription regulator [Janthinobacterium sp. Marseille] Length = 345 Score = 581 bits (1497), Expect = e-167, Method: Compositional matrix adjust. Identities = 282/345 (81%), Positives = 313/345 (90%) Query: 22 LLASAVIILDAKGGIVYANAAAENLLESSFKVLSQQKLSELFLNGKELTALFYQAIEHQF 81 +LASAV++L I YAN AAE LLESS K L+ KL+ELF+N +EL +F +A+EHQF Sbjct: 1 MLASAVLVLRPDSDIAYANPAAEILLESSSKALTNHKLNELFINCEELEQVFQEALEHQF 60 Query: 82 ADKRLDLVLERANREPLQVHTIVTPLDSLDMPVLLELRENVQQLKLDREERMFDQSQANK 141 ADKRLDLVLER R+PLQVH +V+ LDS + PVL+ELRENVQQLKLDREER+ DQSQANK Sbjct: 61 ADKRLDLVLERHGRDPLQVHVVVSALDSAETPVLIELRENVQQLKLDREERLIDQSQANK 120 Query: 142 ELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIKEADRLQTLVDRLLAP 201 ELIRNLAHEIKNPLGGIRGAAQLLE+ELPERHLKE REYTQVIIKEADRLQTLVDRLLAP Sbjct: 121 ELIRNLAHEIKNPLGGIRGAAQLLEMELPERHLKEFREYTQVIIKEADRLQTLVDRLLAP 180 Query: 202 HRHPHIVGDVNIHEVCERVRSLVMAEFPQGLTIKRDYDLSIPEFRGDKEQLIQAVLNIVH 261 HR PHIVGDVNIHEVCERVRSL+++EFP GL IKRDYDLS+PEFRGDKEQLIQAVLNI H Sbjct: 181 HRSPHIVGDVNIHEVCERVRSLIVSEFPNGLKIKRDYDLSVPEFRGDKEQLIQAVLNIAH 240 Query: 262 NAAQALADRIRAGDAELILRTRVSRQVTLSKVRYRLALDLHIIDNGPGIPPDIQDRIFYP 321 NAAQ L+ R++AGDAEL LRTR++RQVTL+KVRYRLALDLHIIDNGPGIPPDI+DRIFYP Sbjct: 241 NAAQVLSARMKAGDAELTLRTRIARQVTLAKVRYRLALDLHIIDNGPGIPPDIRDRIFYP 300 Query: 322 LVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTDFRILIPLP 366 LVSGR+GGSGLGLTLAQTFV QHMG+IEC+SRPGCTDFRILIPLP Sbjct: 301 LVSGRDGGSGLGLTLAQTFVQQHMGLIECESRPGCTDFRILIPLP 345 >gi|152981064|ref|YP_001351846.1| two component sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 763 Score = 92.4 bits (228), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 95/373 (25%), Positives = 168/373 (45%), Gaps = 46/373 (12%) Query: 23 LASAVIILDAKGGIVYANAAAENLLESSFKVLSQQKLSELFLNGKELTALFYQAIEHQFA 82 +++ V++LD +V N + E +L+ F + L ++ + + F Q I F+ Sbjct: 401 MSAGVMVLDRNFKLVTCNESVERILQHDFAQHIGKPLKDI-----DGLSTFAQVITQSFS 455 Query: 83 DKRLDLVLERANREPLQV-HTIVTP--LDSLDMPVLLELRENVQQLKLDREER---MFD- 135 ++ RA +E L H I P + + + L +L RE +FD Sbjct: 456 EQSAQSAAGRAGKESLHWQHQIDVPRRMGGPETENDISLLARGSRLPGAREGSYVVVFDD 515 Query: 136 --------QSQANKELIRNLAHEIKNPLGGIRGAAQLLELELP----ERHLKELREYTQV 183 +S A E+ R LAHEIKNPL I+ +A+ L ++L E K L T+ Sbjct: 516 ISDVISAQRSIAWGEVARRLAHEIKNPLTPIQLSAERLHMKLEGKLNEADAKVLERSTET 575 Query: 184 IIKEADRLQTLVDRLLAPHRHP-HIVGDVNIHEVCERVRSLVMAEFPQGL---TIKRDYD 239 I+ + ++ +VD + P ++ ++++ + E + L ++ + + T+ +D Sbjct: 576 IVNQVTAMKRMVDDFRDYAKTPPAVLSSLDLNALIEEILHLYLSGDGRDIIHATLAQD-- 633 Query: 240 LSIPEFRGDKEQLIQAVLNIVHNAAQALADRIRAGDAELILRTRVSRQVTLSKVRYRL-- 297 +P GD QL Q + N++ NA A+ADR E R+ + ++ YR Sbjct: 634 --LPLIMGDPTQLRQVIHNLLQNAQDAVADR-----GEQAAPARI--DIITEEIHYRSSD 684 Query: 298 -----ALDLHIIDNGPGIPPDIQDRIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDS 352 A+ L I DNGPG P I F P ++ + G+GLGL + + + +H G I+ + Sbjct: 685 GAVSNAVQLTITDNGPGFTPKILAHAFEPYITSKPRGTGLGLAMVKKIIEEHGGRIDIQN 744 Query: 353 RPGCTDFRILIPL 365 R ++ I L Sbjct: 745 RSDTNGAKVAILL 757 >gi|152982315|ref|YP_001354919.1| two component sensor histidine kinase protein [Janthinobacterium sp. Marseille] Length = 427 Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 100/232 (43%), Gaps = 33/232 (14%) Query: 139 ANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIKEADRLQTLVDRL 198 A K L+ N +HE+++PL IR A +L+ + EL+ + L L+D + Sbjct: 222 AQKALLANASHELRSPLARIRMAVELMAADAQPEMRNELK-------RNIGELDQLIDEI 274 Query: 199 LAPHRHPHIVGDVNIHEVCERVRSLVMAEFPQGLTIKRDYDLSIPEFRGDKEQLIQAVLN 258 L R + E + + +LV E + I + E GD L + V N Sbjct: 275 LLASRLDATADATQVFEPID-LTALVAEECAR---IDAQLETQSVEIPGDARLLRRMVRN 330 Query: 259 IVHNAAQALADRIRAGDAELILRTRVSRQVTLSKVRYRLALDLHIIDNGPGIPPDIQDRI 318 ++ NA R G+ I V+L K ++ L + D GPG+P ++ I Sbjct: 331 LLENAR-------RYGNGTAI-------DVSLEKTGNKVVL--QVCDGGPGVPVAERENI 374 Query: 319 FYPL-----VSGREGGSGLGLTLAQTFVHQHMGVIECDSRP-GCTDFRILIP 364 F P S REGG GLGL+L Q H G + C R G + F++ +P Sbjct: 375 FAPFYRLPGASEREGGVGLGLSLVQQIARAHGGEVVCTGREGGGSCFKVTLP 426 >gi|152982333|ref|YP_001354112.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 587 Score = 68.6 bits (166), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 104/235 (44%), Gaps = 27/235 (11%) Query: 142 ELIRNLAHEIKNPLGGIRGAAQLLELELPERHLK--ELREYTQVIIKEADRLQTLVD--R 197 EL ++ HEI PLG I A + L ++ ELR I + R ++ R Sbjct: 362 ELTASIVHEINQPLGAILANADAATMMLNQQSHPDHELRAILADIRDDNLRASLIIQKLR 421 Query: 198 LLAPHRHPHIVGDVNIHEVCERVRSLVMAEFPQGLTIKRDYDLSI------PEFRGDKEQ 251 +L R V+++EV + RSL+ L IK ++I P GD Sbjct: 422 VLLSKRSLE-SKPVSLNEVIDTSRSLL-----GNLAIKHHVMMAIELAPDLPMIMGDSTH 475 Query: 252 LIQAVLNIVHNAAQALADRIRAGDAELILRTRVSRQVTLSKVRYRLALDLHIIDNGPGIP 311 L Q ++N+ NA +A+ + + L ++T Q S +R L + D GPGIP Sbjct: 476 LQQVLINLASNAMEAM-EAVPPAQRTLSIKTE---QCNASHIR------LIVADKGPGIP 525 Query: 312 PDIQDRIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRP-GCTDFRILIPL 365 +I IF + + G G+GL + QT V H G+IE + P G F I P+ Sbjct: 526 TNILPNIFESFYTTKPEGMGMGLAIVQTIVDAHCGLIETFNDPAGGAAFVITFPI 580 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 62.8 bits (151), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/252 (25%), Positives = 104/252 (41%), Gaps = 33/252 (13%) Query: 131 ERMFDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIKEADR 190 ER+ + K I + AH++K PL G+R + EL L + E+ + + + K + Sbjct: 298 ERLSQSIKVQKRFIADAAHQMKTPLAGMRMQS---ELALRQTDQVEIHKSLEQLAKSSKS 354 Query: 191 LQTLVDRLLAPHRHPH---IVGDVNIHEVCERVRSLVMAEFPQGLTIKRDYDLSIPEF-- 245 ++++LLA R + + E+ E R V K D P++ Sbjct: 355 ATRMINQLLALARAENQTPTTRPLQPLELSELARDTVQEWVQTSFNKKIDLGFEQPDYHI 414 Query: 246 --RGDKEQLIQAVLNIVHNAAQALADRIRAGDAELILRTRVSRQVTLSKVRYRLALDLHI 303 GD L + + N++ NA + AG +R R + L+ L + Sbjct: 415 MVNGDAIMLRELLNNLIDNAL----NYTPAG-GHATVRVRADEEARLAY--------LEV 461 Query: 304 IDNGPGIPPDIQDRIF---YPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTD-- 358 D GPGI P RIF Y ++ GSGLGL + + QH I+ + P CT+ Sbjct: 462 EDTGPGIAPHEHKRIFERFYRILGSNVEGSGLGLAIVREIAQQHGAEIDILNNPNCTNPK 521 Query: 359 -----FRILIPL 365 RI +PL Sbjct: 522 APGCLMRITLPL 533 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 765,767 Number of extensions: 28995 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 10 Length of query: 366 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 281 Effective length of database: 906,776 Effective search space: 254804056 Effective search space used: 254804056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)