BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3095.p (499 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 801 0.0 gi|152979868|ref|YP_001354671.1| two-components system response ... 305 6e-84 gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 289 2e-79 gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptio... 220 1e-58 gi|152982294|ref|YP_001354298.1| transcriptional regulator [Jant... 218 6e-58 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/517 (80%), Positives = 440/517 (85%), Gaps = 29/517 (5%) Query: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAMAALQNGTPQVLVSDIRMPGASG 60 MKPIWIVDDDESIRWVLEKALARENLAT+SFS+ARDA+ AL+ G PQVLVSDIRMPG SG Sbjct: 1 MKPIWIVDDDESIRWVLEKALARENLATKSFSNARDALEALKTGAPQVLVSDIRMPGESG 60 Query: 61 LELLQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES 120 LELLQ VKAKHPG+PVIIITAFSDLDSAV+AFQGGAFEYLAKPFD+D AV LIRRAL+ES Sbjct: 61 LELLQAVKAKHPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFDIDHAVGLIRRALEES 120 Query: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 LRET +EQ +A+TPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH Sbjct: 121 LRETSVEQVSAETPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 Query: 181 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 SPRASQPF+ALNTAAIPKDLLESELFGHERGAFTGAQA RRGRFEQAE GTLFLDEIGDM Sbjct: 181 SPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQATRRGRFEQAENGTLFLDEIGDM 240 Query: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 P DLQTRLLRVLSDGHFYRVGGHQ LKANVRVIAATHQNLE RVREGLFREDLYHRLNVI Sbjct: 241 PFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEHRVREGLFREDLYHRLNVI 300 Query: 301 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC 360 RLRLPSLRER EDIPIL R+FL QSA+QLGVE KR+S AMQFLS LE PGNVRQLENLC Sbjct: 301 RLRLPSLRERREDIPILTRHFLQQSAKQLGVEVKRMSDSAMQFLSSLELPGNVRQLENLC 360 Query: 361 NWITVMAPGQTVEIKDLPQDLVEERVHAPQPAQIVAAPASASALAAPLAYAEAAPGATTA 420 NWITVMAPGQTVE KDLP +L E Q AA AS S P + A ATT Sbjct: 361 NWITVMAPGQTVEAKDLPHELTE--------GQAFAASASGS---FPGSQPAAHSYATTD 409 Query: 421 EAGS------------------SSWISLLETEAAQMLASEQPEVMDILGRQFEAALIKIA 462 EA S +WI+LLETEAA +LA+ QPEVMD LGRQFE+ LIK A Sbjct: 410 EAASPNGAPPSMAFAAPAPAEPGNWITLLETEAAALLAAGQPEVMDALGRQFESTLIKTA 469 Query: 463 LKHTHGRKNDAAVRLGIGRNTITRKIQELGIGGAEDD 499 LKHTHGRKNDAAVRLGIGRNTITRKI ELGI GA+DD Sbjct: 470 LKHTHGRKNDAAVRLGIGRNTITRKIHELGIDGAKDD 506 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 305 bits (780), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 195/499 (39%), Positives = 277/499 (55%), Gaps = 38/499 (7%) Query: 4 IWIVDDDESIRWVLEKALARENL---ATQSFSSARDAMAALQNGTPQVLVSDIRMPGASG 60 I IVDD+ +R +LE L + L + Q+ + ARD LQ ++++D+R+P G Sbjct: 6 ILIVDDEADLRELLEITLVKMGLDIDSAQNLAVARDY---LQQHEYALVLTDMRLPDGLG 62 Query: 61 LELLQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES 120 +EL+Q + A++ PV +ITAF D+AV A + GAF+YL+KP +++ ++R AL S Sbjct: 63 IELVQEITAQYKNTPVAVITAFGSADNAVVALKAGAFDYLSKPVGLEQLRVMVRSALRIS 122 Query: 121 LRETDIEQGAAQTP--EILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALH 178 + A +P ++GQ+ AM + I RL++S V I+GESGSGKEL AR +H Sbjct: 123 QADEQPSAKVAVSPALRLMGQSEAMLALRAQIARLARSMAPVAISGESGSGKELAARDIH 182 Query: 179 KHSPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIG 238 S R+ +PFVA+N AIP+ L+E+E FG+ +GAFTGA R G F+ A GGTL LDE+ Sbjct: 183 AQSARSDKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAVDDRDGFFQAANGGTLLLDEVA 242 Query: 239 DMPLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLN 298 D+PL +Q +LLR + + +VG +VR+I+ATHQNL V G FR+DLY+RLN Sbjct: 243 DLPLAMQVKLLRAIQERRVRKVGATTEEPVDVRIISATHQNLHDCVGRGTFRQDLYYRLN 302 Query: 299 VIRLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLEN 358 VI L LP LRER +DI +LA+ L +L RL+P A++ L Q FPGNVR+LEN Sbjct: 303 VIELNLPPLRERLDDIALLAKAILT----RLDAGQARLTPAALEALLQYSFPGNVRELEN 358 Query: 359 LCNWITVMAPGQTVEIKDLPQDLVEERVHAPQPAQIVAAPASASALAAPLAYAEAAPGAT 418 + A +E+ DLV + H P+ A ALA P A AP A Sbjct: 359 ILERALAFANDGVIEVS----DLVLKAAHTPK----AVAAEMVEALAVP-EQAMVAPDAK 409 Query: 419 TAEAGSSSWISLLETEAAQMLASEQPEVMDILGRQFEAALIKIALKHTHGRKNDAAVRLG 478 A S SL P+ +D + R+ +I+ AL T + AA LG Sbjct: 410 PLAATSDLPGSL-------------PDHLDDVERE----IIRRALSKTQFNRTQAAELLG 452 Query: 479 IGRNTITRKIQELGIGGAE 497 I + ++Q L I E Sbjct: 453 ISFRQLRYRMQRLDINAPE 471 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 289 bits (740), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/374 (42%), Positives = 233/374 (62%), Gaps = 10/374 (2%) Query: 2 KPIWIVDDDESIRWVLEKALARENLATQSFSSARDAMAALQNGTPQVLVSDIRMPGASGL 61 + I IVDD+ +R L++ L ++ S A L +++ D +PG SG+ Sbjct: 43 RSILIVDDEPGMRSFLQRTLVGRCSRVEAVDSVEAANVLLGQQHFDLIILDNSLPGKSGV 102 Query: 62 ELLQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES- 120 + LQ ++ V++ITAF+DL++A+ A + GA ++L KPF V++ + I R D + Sbjct: 103 DWLQEIRELGLHNDVVLITAFADLETAIRALRAGAADFLLKPFRVNQILSAIGRCFDRAH 162 Query: 121 --------LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKEL 172 RE D A ++G + A++ + AI RL+ TVLITGESG+GKE+ Sbjct: 163 LRRENFILRRELDSHIDLAGVEGLVGASAALEPIREAIKRLATVPSTVLITGESGTGKEI 222 Query: 173 VARALHKHSPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTL 232 ARA+HK S R+ FV +N A+ D++ESELFGH +GAF+GA + R G F A+GGTL Sbjct: 223 AARAMHKLSNRSHNHFVPINCGAVAPDIIESELFGHIKGAFSGAASSREGLFFYAQGGTL 282 Query: 233 FLDEIGDMPLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFRED 292 FLDE+ ++PL +Q +LLRVL + VG + + +VRVIAAT++N+E+ V+EG FR+D Sbjct: 283 FLDEVAELPLAMQVKLLRVLEEKRIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQD 342 Query: 293 LYHRLNVIRLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGN 352 LY+RLNV++L +P LRER+EDIP LA YF+ Q A+QLGV AK+ L+ +PGN Sbjct: 343 LYYRLNVVQLHMPPLRERTEDIPALAEYFVRQLAQQLGVPAKKPDSALFASLAGYSWPGN 402 Query: 353 VRQLENLCN-WITV 365 VR+L NL W+ + Sbjct: 403 VRELRNLIERWLIL 416 >gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptional activator [Janthinobacterium sp. Marseille] Length = 550 Score = 220 bits (561), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 130/310 (41%), Positives = 191/310 (61%), Gaps = 14/310 (4%) Query: 77 IIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVEL---IRRALDESLR-ETDIEQGAAQ 132 I++T LD QG + + D + ++L + RA ++ R E ++ Q Sbjct: 187 IMVTGIPLLDD-----QGAVRKVIINSRDTTELIQLQEELARAQEKLHRFEMEVSQLRMD 241 Query: 133 TPEILG---QAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKHSPRASQPFV 189 P I G ++P MQ + ++++ + TVLI+GESG GKE++ R +HK S + PFV Sbjct: 242 NPAIAGLITRSPGMQQITALAQKVAKVSATVLISGESGVGKEVLTRLIHKESAHHAGPFV 301 Query: 190 ALNTAAIPKDLLESELFGHERGAFTGAQAM-RRGRFEQAEGGTLFLDEIGDMPLDLQTRL 248 +N AIP+DLLESELFG+E GAFTGAQ + G E A+ GTLFLDEIG++PLDLQ +L Sbjct: 302 KINCGAIPRDLLESELFGYEAGAFTGAQRQGKVGMIEVADKGTLFLDEIGELPLDLQVKL 361 Query: 249 LRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVIRLRLPSLR 308 L+VL D R+GG + ++ +VRV+AAT+++L+ V FR DL++RLNV+ L +P LR Sbjct: 362 LQVLQDRTLTRLGGTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVPLHVPPLR 421 Query: 309 ERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLCNWITVMAP 368 ER EDI L +++L + Q ++ KRLS QA+ L ++PGNVR+L N+ + V AP Sbjct: 422 ERREDILPLIQHYLDELNAQYDLD-KRLSEQALAALLDYDWPGNVRELRNMVERLVVTAP 480 Query: 369 GQTVEIKDLP 378 + LP Sbjct: 481 ESLIRSDSLP 490 >gi|152982294|ref|YP_001354298.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 371 Score = 218 bits (556), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 109/237 (45%), Positives = 163/237 (68%), Gaps = 1/237 (0%) Query: 131 AQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKHSPRASQPFVA 190 A+ ++ G + MQ +F+ IG+++ + VLI GESG+GKELVA+A+H+ S +PFVA Sbjct: 40 ARCGDLYGASAPMQQLFQMIGKVAPTTANVLIAGESGTGKELVAQAIHQLSREQDKPFVA 99 Query: 191 LNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDMPLDLQTRLLR 250 LN +A+ L+E+ELFGHERG+FTGA M++G FE+A+GGTLFLDE+ +M LD+Q +LLR Sbjct: 100 LNCSAVSPQLIEAELFGHERGSFTGAIRMQKGCFERADGGTLFLDEVTEMSLDMQVKLLR 159 Query: 251 VLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVIRLRLPSLRER 310 VL F R+G + + VRV+AAT+++ + ++ G+ R DL++RL V L LP LRER Sbjct: 160 VLETSRFCRIGAEEETEVKVRVVAATNRDPVEAMKSGILRSDLFYRLAVFPLDLPPLRER 219 Query: 311 SEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLCNWITVMA 367 EDI +LA FL Q + G + S + + L++ +PGNVR+L+N+ + +MA Sbjct: 220 GEDIRLLAGLFLDQLNEEDG-RNRVFSKASWRLLNEYNWPGNVRELKNVVHRAYIMA 275 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,002,959 Number of extensions: 37819 Number of successful extensions: 269 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 266 Number of HSP's successfully gapped: 19 Length of query: 499 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 412 Effective length of database: 899,382 Effective search space: 370545384 Effective search space used: 370545384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)