BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3090.p (299 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980802|ref|YP_001354168.1| LysR family transcriptional reg... 134 6e-33 gi|152980163|ref|YP_001352024.1| transcriptional regulator [Jant... 125 5e-30 gi|152983043|ref|YP_001352606.1| LysR family transcriptional reg... 124 8e-30 gi|152982782|ref|YP_001354764.1| LysR family transcriptional reg... 94 9e-21 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 91 6e-20 >gi|152980802|ref|YP_001354168.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 134 bits (337), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 92/296 (31%), Positives = 146/296 (49%), Gaps = 14/296 (4%) Query: 9 SSLMAFEAAARHGSFARAAEELALTEGAISRQIGRLEGFLGVTLFERIGN-RVRLLPH-- 65 ++L AFEA+ARH SF+ AA EL +T A+ + + LE +LG LF R + R RL+ Sbjct: 8 NALRAFEASARHQSFSAAAAELNVTPAAVGQLVRSLEDWLGTPLFNRSASGRARLIATEA 67 Query: 66 GQRYAGHVRETLERLDRDSQHLMSLPTHGASLDIAVSPTFAMRWLIPRLPRLAALHPHIT 125 QR +R L++L + L +G L + VSP FA +WL+PR+ A P Sbjct: 68 AQRALPEIRAGLDKLSLGLERLKEGAINGV-LTVTVSPAFAAKWLLPRIDTFQAAWPDTD 126 Query: 126 VHLAQRMEPFLLAGSGLDAAIHFVHPAWAGMHTYRLLDEVLIPVCHPALLPEATRVPALD 185 V L ++P G+D + + + WAG+ +LLDE + PVC P LL + R+ Sbjct: 127 VRLDTSLKPVDFVALGIDIGVRYGNGDWAGLIAEKLLDEEIYPVCSPLLLRQKQRLRKPT 186 Query: 186 TLPR--------LHRRQNHDAWQRYAAQTGISLTHAAQGPRYDLHGMLIEAALAGLGVAL 237 L + + ++ +W+++ G+ T +G R + +++AA+ G G+AL Sbjct: 187 DLGKETLIHDLSIESHKDFPSWKQWLKVAGVDHTETMRGMRINNSAAVLQAAIDGQGIAL 246 Query: 238 VPRLYVEGELAQGRLVAPWPQDAGISKTFCLVLPEPLQHAGEP-LQAFAQWLLEEA 292 + ++A RLV +P D + + + A P L AF WLL EA Sbjct: 247 ARSVMARDDVAASRLVRLFP-DIKFTSPLAYFIVYRAERASLPRLAAFRDWLLVEA 301 >gi|152980163|ref|YP_001352024.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 125 bits (313), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 95/258 (36%), Positives = 126/258 (48%), Gaps = 10/258 (3%) Query: 1 MRRRIPSNSSLMAFEAAARHGSFARAAEELALTEGAISRQIGRLEGFLGVTLFERIGNRV 60 M R+P +L AFEAAARHGSFA AAEEL +T A S +I LE F+G LF R G V Sbjct: 1 MAIRLPPVHALSAFEAAARHGSFAIAAEELCITPSAFSHRIRLLEEFVGERLFLRDGRSV 60 Query: 61 RLLPHGQRYAGHVRETLERL-DRDSQHLMSLPTHGASLDIAVSPTFAMRWLIPRLPRLAA 119 L G+RY VR+ L L D H P + I V PTFA +P L A Sbjct: 61 SLTEFGRRYLDVVRDALRSLADFPLPH--RHPLAQPRVKITVPPTFARYLFLPHLADFTA 118 Query: 120 LHPHITVHLAQRMEPFLLAGSGLDAAIHFVHPAWAGMHTYRLLDEVLIPVCHPALLPEAT 179 L+P IT+ + + + +A S D I F + T +L +E + PV PA L Sbjct: 119 LYPDITIEVFLSVPLYDMALSETDLEIRFGAGKYPDTTTEKLFEEPVFPVVSPAYL---E 175 Query: 180 RVPALDTLPRLHR----RQNHDAWQRYAAQTGISLTHAAQGPRYDLHGMLIEAALAGLGV 235 ++ L T L + R + WQ + G+ A G R D G+L+EA G GV Sbjct: 176 KIGGLKTPADLQKAQLLRSALEPWQAWFEVAGLDWPEPATGLRIDDLGLLLEAVRHGYGV 235 Query: 236 ALVPRLYVEGELAQGRLV 253 AL + + E +A G +V Sbjct: 236 ALTRKHFAEEMIANGEVV 253 >gi|152983043|ref|YP_001352606.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 124 bits (311), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 90/298 (30%), Positives = 141/298 (47%), Gaps = 16/298 (5%) Query: 9 SSLMAFEAAARHGSFARAAEELALTEGAISRQIGRLEGFLGVTLFERIGNRV-RLLPH-- 65 ++L AFEA+ARH SF+ AA EL +T A+ +Q+ LE +LG LF R G RL+P Sbjct: 8 NALRAFEASARHQSFSAAATELNVTPAAVGQQVRGLEEWLGTPLFYRSGTGTSRLMPTDT 67 Query: 66 GQRYAGHVRETLERLDRDSQHLMSLPTHGASLDIAVSPTFAMRWLIPRLPRLAALHPHIT 125 QR +R ++L + L T GA L + VSP FA +WL+PR+ R +P Sbjct: 68 AQRALPDIRAGFDKLSIGLERLKQASTGGA-LTVTVSPAFAAKWLMPRIDRFHQAYPQTD 126 Query: 126 VHLAQRMEPFLLAGSGLDAAIHFVHPAWAGMHTYRLLDEVLIPVCHPALLPEATRVPALD 185 + L ++ SG+D + + W G+ +L DE + PVC P+ L P +D Sbjct: 127 LRLDTNLKALDFLASGIDVGVRYGSGDWPGLAAIKLADEEIYPVCSPSYLKR--HGPFVD 184 Query: 186 -------TLPRLHRRQNH---DAWQRYAAQTGISLTHAAQGPRYDLHGMLIEAALAGLGV 235 TL QNH W+ + G + +G + + +++AA+ G+ Sbjct: 185 PAALAGHTLIHDLSMQNHPGFQTWRSWLDAAGFPSVQSERGLQINNSAAVLQAAIDNQGI 244 Query: 236 ALVPRLYVEGELAQGRLVAPWPQDAGISKTFCLVLPEPLQHAGEPLQAFAQWLLEEAK 293 AL + + +L GRLV + + SK ++ P + AF +WL+ E Sbjct: 245 ALGRSVMMREDLTVGRLVRLFETISSPSKLAYYIVYRPECAELPRVAAFREWLMSEVN 302 >gi|152982782|ref|YP_001354764.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 321 Score = 94.0 bits (232), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 121/287 (42%), Gaps = 4/287 (1%) Query: 4 RIPSNSSLMAFEAAARHGSFARAAEELALTEGAISRQIGRLEGFLGVTLFERIGNRVRLL 63 R+P L+AFEA AR GS A EL ++ A+S +I +LE + LF + L Sbjct: 7 RLPPIPCLIAFEARARLGSGVLVARELCISPSAVSHRIKQLEEATNLQLFRKTSGEAVLT 66 Query: 64 PHGQRYAGHVRETLERLDRDSQHLMSLPTHGASLDIAVSPTFAMRWLIPRLPRLAALHPH 123 GQ Y VR L L ++ S L IA PTFA + +IPRL L P Sbjct: 67 ADGQAYLEAVRNALNTLSHFGRNPASNTKTRKQLRIAAPPTFAYQIIIPRLSLLQEHFPA 126 Query: 124 ITVHLAQRMEPFLLAGSGLDAAIHFVHPAWAGMHTYRLLDEVLIPVCHPALLPEATRVPA 183 + L + L D I F + G H R+LDE ++P+C P L + Sbjct: 127 LRFELQLSVPLVGLKADDSDIEIRFGIGHYPGYHVTRILDEDVLPMCSPEYLAQHGPFEN 186 Query: 184 LDTLPRLH-RRQNHDAWQRYAAQTGISLTHAAQGPRYDLHGMLIEAALAGLGVALVPRLY 242 + L R R + W + G+ ++ G ++AA G G+AL Sbjct: 187 YEDLQRATLLRCTIEPWHPWFQAAGLDWREPIGTLQFVDIGSCMQAAAWGHGIALARPKM 246 Query: 243 VEGELAQGRLVAPWPQDAGISKT-FCLVLPEPLQHAGEPLQAFAQWL 288 A GRLV + A + + F LPE LQH E L+ WL Sbjct: 247 AASLTASGRLVPVFDLAAKPAYSYFATCLPEALQHT-ESLEVI-NWL 291 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 91.3 bits (225), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 128/302 (42%), Gaps = 29/302 (9%) Query: 10 SLMAFEAAARHGSFARAAEELALTEGAISRQIGRLEGFLGVTLFERIGNRVRLLPHGQRY 69 S+ F AA GSF AA +T A+SR I RLE LGV LF R ++RL G+ Y Sbjct: 12 SIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVY 71 Query: 70 AGHVRETLERL-DRDSQHLMSLPTHGASLDIAVSPTFAMRWLIPRLPRLAALHP--HITV 126 RE L +L D + Q L I+V + L+P LP +P + V Sbjct: 72 FEQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQVEV 131 Query: 127 HLAQRMEPFLLAGSGLDAAIHFVHPAWAGMHTYRLLDEVLIPVCHPALLPEATRVPALDT 186 H++ R F A D AI P + + +L + L+ V P+ L A + L+ Sbjct: 132 HISNRNIDF--AEEAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSYLKRAGKPKTLED 189 Query: 187 LPRLHRRQNHDAWQRYAAQTGISL------THAAQGPRYDLHGM-----------LIEAA 229 L Q H+ Q TG + QG D+ ++ A Sbjct: 190 L------QKHECIQFELPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDVLGIVTLA 243 Query: 230 LAGLGVALVPRLYVEGELAQGRLVAPWPQDAGISKTFCLVLPEPLQHAGEPLQAFAQWLL 289 +G G+ R VE +L +GRLV PQ S+ F L+ P +H ++AF +L+ Sbjct: 244 RSGAGLVQTYRFIVEDDLREGRLVELLPQFGATSRPFILLYPHA-RHLSSRVRAFVDFLM 302 Query: 290 EE 291 E+ Sbjct: 303 EK 304 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.138 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 704,023 Number of extensions: 29395 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 16 Length of query: 299 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 216 Effective length of database: 914,170 Effective search space: 197460720 Effective search space used: 197460720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)