BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3088.p
         (199 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982079|ref|YP_001355196.1| TetR family transcriptional reg...   103   1e-23

>gi|152982079|ref|YP_001355196.1| TetR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 184

 Score =  103 bits (256), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 94/173 (54%)

Query: 13  LLATTEKLIYSGGIHATGMDAIVKESGVARRSIYRLYANKEELVAAALLARDQRWMSWFV 72
           L+ T  +L   GG    G+D I+ E+G+A+ ++Y+ + +K++L+   L  RD  + +  +
Sbjct: 8   LVQTAMRLFAQGGYTGVGIDRIIAEAGIAKMTLYKYFPSKQDLIMEVLTQRDVFFRTSLM 67

Query: 73  GATSQTGAPMARLESIFPALRQWFESEDFHGCAFINAAGELGKTHPDIGAVSALHKQRLR 132
               Q  +   ++ ++F    QWF+ +DF+GC FINAA E  +    I  +SALHKQ + 
Sbjct: 68  NYVDQQESQAQKILALFTWHDQWFKRKDFNGCMFINAAAEFHERKNPIHQISALHKQLII 127

Query: 133 SYLRELTSASSLANPDEVANYFLILIDGATAVAMVTGDASAADSAGRAAALLL 185
            Y+  L   +  A   ++A+   IL+DGA   A ++G+  AA  A   A  ++
Sbjct: 128 DYIESLLKETHGARAAKLASQINILLDGAIDAAHLSGNPDAAMQAWEVAQYMV 180


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.128    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 412,469
Number of extensions: 15312
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 120
Effective length of database: 928,958
Effective search space: 111474960
Effective search space used: 111474960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)