BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3087.p (555 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis pro... 332 4e-92 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 330 2e-91 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 327 2e-90 gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis pro... 323 1e-89 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 312 4e-86 >gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 573 Score = 332 bits (851), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 218/517 (42%), Positives = 324/517 (62%), Gaps = 5/517 (0%) Query: 10 FRNTKVATQLMLGFSILILFMAALGGNALYLMGNINRQLNDVQTNWMPSVTTAQTMLAEM 69 F N K+ T+L +GF +++ MAAL + M NI ++LN + + + + Q M + Sbjct: 3 FSNLKIGTRLTIGFFLVLALMAALTACGVNGMQNIQKRLNTIIDDNVHKMNLLQDMSESV 62 Query: 70 RAVNLAQYRALTANNAQRMQDAKTRIAAALGRYSKAAEQYRHLISTPEEQKAFDELQDLL 129 V+ + + N M ++ A +Y A + E+ ++++ Sbjct: 63 HIVSHSMGTLVLMRNESEMVLEIKKVVDARSKYDAAILVLEKKPALEVERVLREKIKGAQ 122 Query: 130 TRYQQIGDQLLQTVEQGNEIEAANIMKDTLYPVRTAMEAKIQQIIRINQQGAAQAAEQGQ 189 + + DQ+++ + EA+ ++ T P+ A + + Q I++ + A Sbjct: 123 ADARVVNDQIIEFARGNKDEEASALLIKTAEPLNQAWQQALDQSIQLQKHANEADAVAAT 182 Query: 190 ASYTRSHGIIIAFTVAATVAGLAIALLISRRLTRQLGGEPGQAMWLSGQIAAGNLAARLE 249 A+Y S + A + A + G+ IA +I+R ++R + AM ++ +A G+L + +E Sbjct: 183 ATYENSQLYMGALSGVALILGIVIAWVITRSISRPIIS----AMNVANTVALGDLTSHIE 238 Query: 250 LKSHDTSS-LMRSLMIMRDQLSGLVGQIKHASSSIHVAAHEIAQGNIDLSQRTEEQAASL 308 + + D S L+ +L M D L +V Q++H + +I A+ EIA GN+DLS RTEEQA+SL Sbjct: 239 ITTADESGQLLHALKDMNDNLVSIVTQVRHGTETIATASAEIATGNLDLSARTEEQASSL 298 Query: 309 EETASSMEQLTSTVQQNANNARQASGMASAGAEVAHRGEAEIAQVVTTMREMSVSSHQMS 368 E+TASSME+LTSTV+ N +NARQA+ +A ++ A RG +AQVV TM ++ SS ++S Sbjct: 299 EQTASSMEELTSTVKHNFDNARQANKLALNASDAASRGGVVVAQVVETMGFINGSSRKIS 358 Query: 369 DIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSAAAAKEIKDLIE 428 DII VI+GI+FQTNILALNAAVEAARAGE GRGFAVVATEVR LAQRS+AAAK+I+ LI Sbjct: 359 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSSAAAKDIRILIG 418 Query: 429 NSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTLMKEIAAASEEQSAGIGQVNTAIVQMDQ 488 +SV +I +G+ LVE AG T+ EI+ S + T++M EI AASEEQSAGI QVN AI QMDQ Sbjct: 419 SSVQKIDAGSLLVEEAGRTMKEIVISVQQVTSIMAEITAASEEQSAGIEQVNQAIAQMDQ 478 Query: 489 VTQQNAALVEQAAAAAQAMMQQAQALTEAVSMFTLED 525 VTQQNAALVE+AAAAA ++ +QA+ L++ V +F L++ Sbjct: 479 VTQQNAALVEEAAAAAASLREQAENLSKVVRVFKLDN 515 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 330 bits (846), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 207/516 (40%), Positives = 325/516 (62%), Gaps = 5/516 (0%) Query: 10 FRNTKVATQLMLGFSILILFMAALGGNALYLMGNINRQLNDVQTNWMPSVTTAQTMLAEM 69 +N K+ +L L F +++ + L A +G +N +++V + P A M ++ Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 70 RAVNLAQYRALTANNAQRMQDAKTRIAAALGRYSKAAEQYRHLISTPEEQKAFDELQDLL 129 + AL +Q T+I A + A + + + ++ LQ Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 130 TRYQQIGDQLLQTVEQGNEIEAANIMKDTLYPVRTAMEAKIQQIIRINQQGAAQAAEQGQ 189 +++ + D ++ G + EA ++ + P + + A I ++I + ++ + Sbjct: 121 SKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEAN 180 Query: 190 ASYTRSHGIIIAFTVAATVAGLAIALLISRRLTRQLGGEPGQAMWLSGQIAAGNLAARLE 249 A +++ +I F++ A + A+L +R +TR L QA+ L+ ++A G+L + Sbjct: 181 AKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLS----QAVVLARKVADGDLTGSIV 236 Query: 250 LKSHD-TSSLMRSLMIMRDQLSGLVGQIKHASSSIHVAAHEIAQGNIDLSQRTEEQAASL 308 ++S D T L+++L M + L +V Q++ + +I A+H+IA GN+DLS RTE+QA+SL Sbjct: 237 VESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSL 296 Query: 309 EETASSMEQLTSTVQQNANNARQASGMASAGAEVAHRGEAEIAQVVTTMREMSVSSHQMS 368 EETASSME+LTSTV+QNA NARQ++ +A + +EVA RG A +++VV TM E++ S+ ++ Sbjct: 297 EETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIV 356 Query: 369 DIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSAAAAKEIKDLIE 428 DII VI+GI+FQTNILALNAAVEAARAGE GRGFAVVA+EVR LAQRSA+AAKEIK+LI Sbjct: 357 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIG 416 Query: 429 NSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTLMKEIAAASEEQSAGIGQVNTAIVQMDQ 488 +SV+++ G+RLV+ AG T+ E+++S R T +M EI AAS+EQ+ GI Q+N A++QMDQ Sbjct: 417 DSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQ 476 Query: 489 VTQQNAALVEQAAAAAQAMMQQAQALTEAVSMFTLE 524 VTQQNAALVE+AAAAA+++ QA L++ V +F L+ Sbjct: 477 VTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLD 512 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 327 bits (837), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 223/527 (42%), Positives = 333/527 (63%), Gaps = 31/527 (5%) Query: 12 NTKVATQLMLGFSILILFMAALGGNALYLMGNINRQLNDVQTNWMPSVTTAQTMLAEMRA 71 N K++T+L GF++L+ M + ++G + +L +V T+ V T QTML + R Sbjct: 5 NLKISTRLSFGFALLLTLMVMM-----TVVGIL--RLQEVGTS--ADVMT-QTMLPKER- 53 Query: 72 VNLAQ--YRALTANNAQRMQDAKTRIAAALGRYSKAAE-----------QYRHLISTPEE 118 LAQ A+ N A+ + AKT A + K + + +I TPE+ Sbjct: 54 --LAQEWLSAVDVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPED 111 Query: 119 QKAFDELQDLLTRYQQIGDQLLQTVEQGNEIEAANIMKDTLYPVRTAMEAKIQQIIRINQ 178 ++ F+EL Y+ I + + +G EA ++ + + P A I +++ + Sbjct: 112 KRLFEELVVARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEK 171 Query: 179 QGAAQAAEQGQASYTRSHGIIIAFTVAATVAGLAIALLISRRLTRQLGGEPGQAMWLSGQ 238 + +A Q+++ ++I AA G+ A ++ +TR L +A+ ++ Sbjct: 172 KLIDEAGTSIQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLN----RAVTVART 227 Query: 239 IAAGNLAARLELKSHD-TSSLMRSLMIMRDQLSGLVGQIKHASSSIHVAAHEIAQGNIDL 297 +A+G+L+A++E+ S+D T LM++L M L+ V +++ + +I A+ +IA GN+DL Sbjct: 228 VASGDLSAKIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDL 287 Query: 298 SQRTEEQAASLEETASSMEQLTSTVQQNANNARQASGMASAGAEVAHRGEAEIAQVVTTM 357 S RTEEQA+SL ETA+SM QLTSTV+QNA+NARQA+ +A + ++VA +G + +++VV TM Sbjct: 288 SSRTEEQASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTM 347 Query: 358 REMSVSSHQMSDIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSA 417 ++ S+ ++ DIISVI+GI+FQTNILALNAAVEAARAGE GRGFAVVA+EVR LAQRSA Sbjct: 348 ASINESARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA 407 Query: 418 AAAKEIKDLIENSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTLMKEIAAASEEQSAGIG 477 AAAKEIK LI +SV ++++G++LV AG T+ EI+ S R T +M EI AAS+EQS+GI Sbjct: 408 AAAKEIKILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGID 467 Query: 478 QVNTAIVQMDQVTQQNAALVEQAAAAAQAMMQQAQALTEAVSMFTLE 524 QVN AI QMDQVTQQNAALVE+AAAAA+++ QA L VS F L+ Sbjct: 468 QVNQAIGQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLD 514 >gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 323 bits (828), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 237/563 (42%), Positives = 343/563 (60%), Gaps = 36/563 (6%) Query: 10 FRNTKVATQLMLGFSILILFMAALGGNALYLMGNINRQLNDVQTNWMPS---VTTAQTML 66 F N + +L+ + + + + G ++ + + N L DV N + S + TA T L Sbjct: 2 FNNLSIKMRLIGTMAFMGIMLIVGGAMGVFGLQSTNNSLQDVYGNQLASSQAINTAITRL 61 Query: 67 AEMRA-VNLAQYRALTANNAQRMQDAKTRIAAALGRYSKAA-EQYRHLISTPEEQKAFDE 124 + R+ ++ ++ + NA+ A T L S AA +QY L +E+K DE Sbjct: 62 FQARSTIDRVLIKSSGSKNAEIFARADT-----LRNESDAAWKQYYALPMNADEKKLADE 116 Query: 125 LQDLLTRYQQIGD-QLLQTVEQGNEIEAANIMKDTLYPVRTAMEAKIQQIIRINQQGAAQ 183 + Y + G L++ ++ G EA +M + P+ M +++ + AA Sbjct: 117 VTANRDTYLREGALPLIKAIQAGLFEEAELLMLEKATPLFIKMTQSAEKLQEFQMKAAA- 175 Query: 184 AAEQGQASYTRSHGIIIAFTVAATVAGLAIALLI----SRRLTRQLGGEPGQAMWLSGQI 239 ASY S + F +AA + G+ LL+ + L R + G+ + I Sbjct: 176 ------ASYESSQSMFSLFRIAA-IGGVLFGLLVVAIAAFFLIRAIMQPLGEMLNHFSAI 228 Query: 240 AAGNLAARLELKS-HDTSSLMRSLMIMRDQLSGLVGQIKHASSSIHVAAHEIAQGNIDLS 298 +AG+L +R+E+KS ++ LM L +M+ L V ++ S++I VA +IA GN+DLS Sbjct: 229 SAGDLTSRIEVKSRNEMGKLMGGLQVMQKSLIETVFNVRQGSTAIGVATQQIAAGNLDLS 288 Query: 299 QRTEEQAASLEETASSMEQLTSTVQQNANNARQASGMASAGAEVAHRGEAEIAQVVTTMR 358 RTE+QA+SLEETASSME+LTSTV+QNA+NARQA+ +A++ + VA +G ++QVV TM Sbjct: 289 SRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAASASTVAEKGGVVVSQVVDTME 348 Query: 359 EMSVSSHQMSDIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSAA 418 E++ S+ ++ DII VI+GI+FQTNILALNAAVEAARAGE GRGFAVVA+EVR LAQRSAA Sbjct: 349 EINTSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAA 408 Query: 419 AAKEIKDLIENSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTLMKEIAAASEEQSAGIGQ 478 AAKEIK LI +SV++++ G++LV AG T+ E++ + T +M EI AAS+EQSAGI Q Sbjct: 409 AAKEIKTLIGDSVDKVEIGSKLVAEAGVTMKEVVHGVQQVTDIMSEITAASQEQSAGIEQ 468 Query: 479 VNTAIVQMDQVTQQNAALVEQAAAAAQAMMQQAQALTEAVSMFTLEDAALA--------T 530 VN AI QMDQVTQQNAALVE+AAAAA+++ +QA L EAVS+F L+ A A Sbjct: 469 VNQAISQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAAAAPVKKTASK 528 Query: 531 LPGVAASGLPAPARQVRGMARPA 553 + VA+S PAP + R +A PA Sbjct: 529 IAAVASS--PAPVK--RAIAAPA 547 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 312 bits (799), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 200/452 (44%), Positives = 296/452 (65%), Gaps = 10/452 (2%) Query: 103 SKAAEQYRHLISTPEEQKAFDELQDLLTRYQQIGDQLLQTVEQGNEIEAANIMKDTLYPV 162 ++A ++ I + + + L D R+ + D+ + V QG EA ++ + P Sbjct: 94 AEALDKLDRTIKSEKGRTYIKALTDARGRFTPVKDKFVALVAQGMRAEAQILLFAEVRPA 153 Query: 163 RTAMEAKIQQIIRINQQGAAQAAEQGQASYTRSHGIIIAFTVAATVAGLAIALLISRRLT 222 + + +++ +A E + ++ +V A + + L +R +T Sbjct: 154 QLEYMLGLDRLVEFQSNLMHKAGEDAHEVSANAQQLVGILSVIAVIISAFLGFLATRSIT 213 Query: 223 RQLGGEPGQAMWLSGQIAAGNLAARLELKSHD-TSSLMRSLMIMRDQLSGLVGQIKHASS 281 R L QA+ L+ ++A G+L + + S D T L+++L M + L +V Q++ + Sbjct: 214 RPLS----QAVGLARKVADGDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTD 269 Query: 282 SIHVAAHEIAQGNIDLSQRTEEQAASLEETASSMEQLTSTVQQNANNARQASGMASAGAE 341 +I A+ +IA GN+DLS RTEEQA+SLEETASSME+LTSTV+QNA+NARQ++ +A +E Sbjct: 270 TIATASSQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQSNQLALTASE 329 Query: 342 VAHRGEAEIAQVVTTMREMSVSSHQMSDIISVIEGISFQTNILALNAAVEAARAGENGRG 401 VA RG A ++QVV TM ++ S++++ DII VI+GI+FQTNILALNAAVEAARAGE GRG Sbjct: 330 VAVRGGAVVSQVVETMGSINDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 389 Query: 402 FAVVATEVRALAQRSAAAAKEIKDLIENSVNRIQSGTRLVEAAGDTIAEILQSSSRTTTL 461 FAVVA+EVR LAQRSA+AAKEIK LI++SV ++ +G+RLV AG T+AE+++S R T + Sbjct: 390 FAVVASEVRNLAQRSASAAKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDI 449 Query: 462 MKEIAAASEEQSAGIGQVNTAIVQMDQVTQQNAALVEQAAAAAQAMMQQAQALTEAVSMF 521 M EI AAS+EQ+ GI Q+N A++QMDQVTQQNAALVE+AAAAA+++ QA L++ VS+F Sbjct: 450 MGEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVF 509 Query: 522 TLEDAALATLPGVAASGLPAPARQVRGMARPA 553 L+ A+A A S + APA R +++PA Sbjct: 510 KLDANAVALQ---ATSRVAAPAS--RPVSKPA 536 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.124 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 913,091 Number of extensions: 28786 Number of successful extensions: 293 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 219 Number of HSP's successfully gapped: 21 Length of query: 555 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 467 Effective length of database: 895,685 Effective search space: 418284895 Effective search space used: 418284895 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)