BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3086.p (427 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Jan... 202 4e-53 gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Jan... 201 8e-53 gi|152982732|ref|YP_001353683.1| major facilitator transporter [... 174 9e-45 gi|152980800|ref|YP_001354171.1| major facilitator superfamily s... 157 1e-39 gi|152982376|ref|YP_001354943.1| major facilitator transporter [... 149 2e-37 >gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 437 Score = 202 bits (514), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 139/406 (34%), Positives = 212/406 (52%), Gaps = 9/406 (2%) Query: 23 SSSIGNALEWFDILIYG-AFAVVIAKQFFPTGDDSVSLLLTFATFGVSFFMRPLGAVVLG 81 +SSIG +EW+D LIYG A A+V K FFP + L T+ V FF RPLG + G Sbjct: 27 ASSIGTIIEWYDFLIYGMAAALVFNKLFFPNVSPVIGTLAALGTYAVGFFARPLGGAIFG 86 Query: 82 AYSDRAGRKAALMLSITLMTIGTAMIAFMPSYASIGLLAPAGIALGKMIQGFSAGGEFGS 141 + DR GRK+ L+L++ +M IGT +I +P+Y IG+ AP + + + IQG GGE+G Sbjct: 87 HFGDRVGRKSMLLLTMFIMGIGTVLIGCLPTYEHIGIWAPVLLIVLRFIQGVGLGGEWGG 146 Query: 142 STAFLVEHAP-HRRGFFSSWQVASQGISLLLAAVFGAVLNNLLTPE-QLASWGWRVPFIF 199 + ++EHAP HRRGF+ S + L+LA A+++ L PE SWGWR+PF+ Sbjct: 147 AALMVLEHAPKHRRGFYGSLVQVGFPLGLVLATGVFAIVSKL--PEADFLSWGWRIPFLL 204 Query: 200 GLLIAPAGIYIRRNLEEAPEFEQ---ASEKTKAPLRDTFAHQKMRLLIGAGSVIMATVSV 256 +++ G IR +EE+P F Q +E +K P+ D L G I V Sbjct: 205 SIVLVVVGYVIRSKVEESPIFLQMKAKNELSKQPVLDAILKNPRAFLTAIGLKISEVSWV 264 Query: 257 Y-LSLYIPTYAVKQLGLPAWSSFAAMSVAGLIMFIGSPLVGALSDKIGRTPFMIASSALY 315 Y L+++I +A L LP + A L+ I PL G LSDK+GR P I + Sbjct: 265 YILTVFIVVHATNNLQLPKSLILDGILYAALVEVITIPLFGLLSDKVGRRPMYIWGALFT 324 Query: 316 IVLTYPMFVFLTNSPGFLQLLLLQTVIGVLMTMYFAAMPALLADIFPVATRGTGMSLAYN 375 + L +P+F+ L + + ++ + + FA ++F R +G +L + Sbjct: 325 VALAFPLFILLDTRDSAIIIGVMIVALSLGHGFMFAPEATYFPELFGANVRYSGATLGFQ 384 Query: 376 IAVTLFGGFAGLIITWLIDVTGDKLSVSYFVIFGAVLSLAASTAAR 421 +A + GG + +I T L+ G VS +I A ++L A+ +AR Sbjct: 385 VAAAIGGGLSPIIATGLMAYFGGTTGVSVMLILLAAITLVAAISAR 430 >gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 439 Score = 201 bits (510), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 140/418 (33%), Positives = 221/418 (52%), Gaps = 21/418 (5%) Query: 1 MTSNTTAPGAGTTHPQA-----RRAIISSSIGNALEWFDILIYG-AFAVVIAKQFFPTGD 54 M N +A A T +P+A R + +S+IG +EW+D LIYG A A+V K FFP D Sbjct: 1 MAFNASAT-ASTVNPRAEKQKIRSVVFASAIGTIIEWYDFLIYGMAAALVFNKLFFPNID 59 Query: 55 DSVSLLLTFATFGVSFFMRPLGAVVLGAYSDRAGRKAALMLSITLMTIGTAMIAFMPSYA 114 + L ++ V F RPLG + G Y DR GRK+ LM+++ LM IGT +I +P+Y Sbjct: 60 PLLGTLAALGSYAVGFLARPLGGAIFGHYGDRIGRKSILMITLALMGIGTFLIGLLPTYG 119 Query: 115 SIGLLAPAGIALGKMIQGFSAGGEFGSSTAFLVEHAP-HRRGFFSSWQVASQGISLLLAA 173 IG+ AP + ++IQG GGE+G + ++EH+P +RRGF+ S + L++A Sbjct: 120 QIGIWAPILLITLRIIQGIGLGGEWGGAAVMVLEHSPKNRRGFYGSLVQVGFPLGLVIAT 179 Query: 174 VFGAVLNNLLTPE-QLASWGWRVPFIFGLLIAPAGIYIRRNLEEAPEFEQASEK---TKA 229 + + ++ + PE + SWGWR+PF+ ++ GI+IR+N+EE+P FE + +K+ Sbjct: 180 LVFSFVSKM--PEADILSWGWRIPFLLSAVLIIVGIFIRKNVEESPVFEDMKMRKALSKS 237 Query: 230 PLRDTFAHQKMRLLIGAGSVIMATVSVY-LSLYIPTYAVKQLGLPAWSSFAAMSVAGLIM 288 P+ D I G I VY L++++ YA LGLP A+ +A ++ Sbjct: 238 PVMDVILKHPRTFFIAIGLKISEVSWVYMLTVFMVVYATTTLGLPKSLILEAILIAAMVE 297 Query: 289 FIGSPLVGALSDKIGRTPFMIASSALYIVLTYPMFVFLT-NSPGFLQLLLLQTVIGVLM- 346 + PL G LSD IGR P + I +P+F+F+ +P + ++L V+ + M Sbjct: 298 IVTIPLFGYLSDVIGRRPLYFIGALFTIAFAFPLFLFMEMRTP---EAVILTVVVAMSMG 354 Query: 347 -TMYFAAMPALLADIFPVATRGTGMSLAYNIAVTLFGGFAGLIITWLIDVTGDKLSVS 403 + FA ++F R +G S + +A + GG + +I T L G VS Sbjct: 355 HGLMFAPEATYFPELFGANVRYSGASFGFQVAAAIGGGLSPIIATALAGYLGGTAGVS 412 >gi|152982732|ref|YP_001353683.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 553 Score = 174 bits (441), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 106/327 (32%), Positives = 179/327 (54%), Gaps = 18/327 (5%) Query: 15 PQARRAIISSSIGNALEWFDILIYGAFAVVIAKQFFPTGDDSVSLLLTFATFGVSFFMRP 74 P+ R+ I +SS+G EW+D +YG+ A +IAKQFF D + + + F F +RP Sbjct: 13 PEERKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFIFALLAFAAGFIVRP 72 Query: 75 LGAVVLGAYSDRAGRKAALMLSITLMTIGTAMIAFMPSYASIGLLAPAGIALGKMIQGFS 134 GA+V G D GRK +++I +M T ++ +P+YASIG+ AP + + +++QG + Sbjct: 73 FGAIVFGRLGDMIGRKYTFLVTIVIMGTSTFIVGLLPNYASIGIAAPIILIILRILQGLA 132 Query: 135 AGGEFGSSTAFLVEHAPH-RRGFFSSW--QVASQGISLLLAAVFGAVLNNLLTPEQLASW 191 GGE+G + ++ EHAPH +RG F+SW A+ G+ + L + G + E A W Sbjct: 133 LGGEYGGAATYVAEHAPHGKRGAFTSWIQTTATMGLFMSLLVILGT--RTAMGEEAFADW 190 Query: 192 GWRVPFIFGLLIAPAGIYIRRNLEEAPEF---EQASEKTKAPLRDTFAHQ-KMRLLI--- 244 GWR+PF+ + + ++IR ++ E+P F + + +KAPL + FA ++++I Sbjct: 191 GWRIPFLVSVFLLGISVWIRLSMNESPAFLKMKSEGKASKAPLTEAFAKWGNLKIVILAL 250 Query: 245 ---GAGSVIMATVSVYLSLYIPTYAVKQLGLPAWSSFAAMSVAGLIMFIGSPLVGALSDK 301 AG ++ + +L+ T +K G A AA + F+ + G+LSDK Sbjct: 251 IGLTAGQAVVWYTGQFYALFFLTQTLKVDGPTANILIAASLLLATPFFV---IFGSLSDK 307 Query: 302 IGRTPFMIASSALYIVLTYPMFVFLTN 328 IGR P ++A + + +P+F LT+ Sbjct: 308 IGRKPIIMAGCLIAALTYFPIFNALTH 334 >gi|152980800|ref|YP_001354171.1| major facilitator superfamily sugar transporter [Janthinobacterium sp. Marseille] Length = 544 Score = 157 bits (396), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 105/331 (31%), Positives = 174/331 (52%), Gaps = 20/331 (6%) Query: 13 THPQARRAIISSSIGNALEWFDILIYGAFAVVIAKQFFPTGDDSVSLLLTFATFGVSFFM 72 T + R+ +++S++G EW+D IYG+ A+ ++ FP + + +LL + F + Sbjct: 15 TAKEERQVVLASTLGTIFEWYDFFIYGSLAIFMSSVLFPPDNPTAALLASLGALAAGFVI 74 Query: 73 RPLGAVVLGAYSDRAGRKAALMLSITLMTIGTAMIAFMPSYASIGLLAPAGIALGKMIQG 132 RP+GAV+ G DR GRK +L+I +M TA+I F+PSYAS+G A + + +++QG Sbjct: 75 RPIGAVLFGYLGDRLGRKHTFLLTIIMMGGSTALIGFLPSYASVGHAAWISLVVLRLVQG 134 Query: 133 FSAGGEFGSSTAFLVEHA-PHRRGFFSSW-QV-ASQGISLLLAAVFGAVLNNLLTPEQLA 189 + GGE+G + ++ EH+ P RRG + W Q+ +S G+ L +A + G + Sbjct: 135 LAVGGEYGGAVIYVAEHSRPSRRGLLTGWIQITSSMGLILSIAVILGT--QATMDMASFK 192 Query: 190 SWGWRVPFIFGLLIAPAGIYIRRNLEEAPEFEQASEK---TKAPLRDTF---AHQKMRLL 243 WGWRVPFI + + +Y+R L E+P F + + +K P+RDTF KM LL Sbjct: 193 EWGWRVPFIISIAMLIFSVYVRAKLHESPVFTRLKAQGRLSKNPVRDTFFKWPSLKMILL 252 Query: 244 IGAGSVIMATVSVYLS--LYIPTYAVKQLGLPAWSSFAAMSVAGLIMFIGSP---LVGAL 298 G V + Y + Y+ + + + L + + + + L IG+P G L Sbjct: 253 ALFG-VTAGQGATYFTGQFYVMIFLQQAVMLDQRTVYTLICIGFL---IGAPAFVFFGWL 308 Query: 299 SDKIGRTPFMIASSALYIVLTYPMFVFLTNS 329 SD++GR M+A + + PMF L + Sbjct: 309 SDRLGRKWIMMAGLFIAALCYRPMFASLLEA 339 >gi|152982376|ref|YP_001354943.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 439 Score = 149 bits (377), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 124/388 (31%), Positives = 198/388 (51%), Gaps = 27/388 (6%) Query: 21 IISSSIGNALEWFDILIYGAFAV-VIAKQFFPTGDDSVSLLLTFATFGVSFFMRPLGAVV 79 + +S IG +E+FD IY AV V FFP+ + + +L + ATF ++FF RP+G+ V Sbjct: 18 LFASLIGTTIEFFDFYIYATAAVLVFPTLFFPSSNPTAGMLQSLATFAIAFFARPVGSAV 77 Query: 80 LGAYSDRAGRKAALMLSITLMTIGTAMIAFMPSYASIGLLAPAGIALGKMIQGFSAGGEF 139 G Y DR GRKA L+ ++ M I T +I +P+Y +IG LAP +AL + QG GGE+ Sbjct: 78 FGHYGDRIGRKATLVAALLTMGISTVVIGLLPTYEAIGTLAPLLLALCRFGQGLGLGGEW 137 Query: 140 GSSTAFLVEHAPHRR-GFFSSWQVASQGISLLLAAVFGAVLNNLLTPEQLASWGWRVPFI 198 G + E+AP + ++ + + L+ +L+ LT EQ S+GWR+PFI Sbjct: 138 GGAVLLATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLSETLTNEQFFSYGWRIPFI 197 Query: 199 FGLLIAPAGIYIRRNLEEAPEFEQ---ASEKTKAPLRDTFAHQKMRLLIGAGSVIMATVS 255 ++ G+Y+R + E P F++ +E+ K P+ F L++G I+AT + Sbjct: 198 ASAVLVLVGLYVRLKITETPVFQKVLDKNERVKVPIATIFREHSRVLVLGT---IIATAT 254 Query: 256 VYL----SLYIPTYAVKQLGLPAWSSFAAMSVAGLIMF-IGSPLVGALSDKIGRTPFMIA 310 L +++ ++ LG F + + ++ F + P+ L+DK GR MI Sbjct: 255 FVLFYLMTVFALSWGTTGLGY-TRKEFLILQLFAVVFFALTIPISALLADKYGRRITMIL 313 Query: 311 SS---ALYIVLTYPMFVFLTNSPG---FLQLLLLQTVIGVLMTMYFAAMPALLADIFPVA 364 S L+ L PMFV ++ G FL L L LM M + + +L+++FP Sbjct: 314 VSIAIMLFGFLISPMFV-AHDAIGVTFFLSLGL------ALMGMTYGPLGTMLSELFPTE 366 Query: 365 TRGTGMSLAYNIAVTLFGGFAGLIITWL 392 R TG+SL +N+ + A TWL Sbjct: 367 IRYTGVSLTFNLGGIVGASLAPYAATWL 394 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,006,367 Number of extensions: 44115 Number of successful extensions: 280 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 260 Number of HSP's successfully gapped: 6 Length of query: 427 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 341 Effective length of database: 903,079 Effective search space: 307949939 Effective search space used: 307949939 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)