BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3085.p (549 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982343|ref|YP_001355176.1| propionate catabolism operon re... 792 0.0 gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptio... 238 8e-64 gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 235 6e-63 gi|152979868|ref|YP_001354671.1| two-components system response ... 218 6e-58 gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 210 2e-55 >gi|152982343|ref|YP_001355176.1| propionate catabolism operon regulatory protein [Janthinobacterium sp. Marseille] Length = 543 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/545 (76%), Positives = 466/545 (85%), Gaps = 12/545 (2%) Query: 1 MKRPAHYDRDT-DKPVIWTVSVSRLSELFRDITLEFDAVADIEPIQLGFDEAVRQIRERL 59 MKRP+ RD DKPVIWTVS+SRL ELFRDITLEFD ADIEPI LGF++AVR IRERL Sbjct: 1 MKRPSSPFRDNADKPVIWTVSISRLFELFRDITLEFDEQADIEPIHLGFEDAVRHIRERL 60 Query: 60 ASERCDVVISAGSNGAYLKSRLPVPVVVARASGFDVMQALARARQISARIALVTYQEAMP 119 A+ERCD VI+AGSNGAYLKSRL VPV++A+ASGFDVMQALARAR+I+ I LVTYQE MP Sbjct: 61 ATERCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARARKITPDIGLVTYQETMP 120 Query: 120 ALSEFQQMFGLDIVQRTYATEEDARAVVHELKAAGIKAVVGAGLITDLAEEAGMQGIFLY 179 AL+EFQ FGL+I QRTY TEEDARA ++ELK AGIKA+VGAGLITDLAEEAG+ GIF+Y Sbjct: 121 ALAEFQTTFGLNIAQRTYVTEEDARAQINELKTAGIKAIVGAGLITDLAEEAGLTGIFVY 180 Query: 180 SAATVRQAFEDALELARLTQLESTRGPSLPVAENLRARHHLKDLRGDSAVMETVRQSITL 239 S+A++RQAFEDALELARLTQLE+TRG S PVA+ LRA+HH+KDLRG+SA ME+VRQSITL Sbjct: 181 SSASIRQAFEDALELARLTQLEATRGRSFPVADTLRAKHHIKDLRGESAAMESVRQSITL 240 Query: 240 FARSPANVLIQGETGTGKELAAQAIHRAHPLMQGKTHAAHPFVAINCGALAESLLESELF 299 FA+S A VLIQGETGTGKEL AQA+HRAHPLMQGKT A HPFVA+NCGALAESLLESELF Sbjct: 241 FAKSAATVLIQGETGTGKELVAQAMHRAHPLMQGKTQAGHPFVAVNCGALAESLLESELF 300 Query: 300 GYEEGAFTGSRRGGRPGVFEAAHRGSLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRP 359 GYEEGAFTGSRRGGR G+FEAAHRG+L LDEIGEMPL LQTRLLRVLEEREVVRVGGTRP Sbjct: 301 GYEEGAFTGSRRGGRAGLFEAAHRGTLFLDEIGEMPLSLQTRLLRVLEEREVVRVGGTRP 360 Query: 360 IPVQVRIISATHCDLEARVREGRFRADLYYRLSVLRLQLPPLRARREDIPALAEWHLKHA 419 IPV VRIISATHCDL+ARVREGRFRADL+YRLSVLRL LPPLR R+ED+ ALAEW+LK+A Sbjct: 361 IPVSVRIISATHCDLDARVREGRFRADLFYRLSVLRLSLPPLRERQEDVAALAEWYLKNA 420 Query: 420 LAALDARAHANLSAEILRCAPLLCAYEWPGNVRELRNLMERLALFLAAEPLQALTAALIQ 479 LA+LD R ANL AE+L C PLL AY WPGNVRELRNLMERLALFLAA PLQALT A ++ Sbjct: 421 LASLDVRPPANLQAELLTCLPLLLAYRWPGNVRELRNLMERLALFLAAAPLQALTPAFLK 480 Query: 480 RVAPEL---VARSVDANTELPAVNDMETAPDLEDIHAALRRFRGNRAAAARHLGMSRTTL 536 +APEL +AR + E P + E + L R GNR AAA +LG+SRTTL Sbjct: 481 SIAPELSGVIARDAAVSHEPPV--------EAETLQQVLLRHHGNREAAANYLGISRTTL 532 Query: 537 WRKLK 541 WR+L+ Sbjct: 533 WRRLQ 537 >gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptional activator [Janthinobacterium sp. Marseille] Length = 550 Score = 238 bits (606), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 138/307 (44%), Positives = 197/307 (64%), Gaps = 26/307 (8%) Query: 241 ARSPANVLIQGETGTGKELAAQAIHRAHPLMQGKTHAAHPFVAINCGALAESLLESELFG 300 A+ A VLI GE+G GKE+ + IH+ H A PFV INCGA+ LLESELFG Sbjct: 266 AKVSATVLISGESGVGKEVLTRLIHKE------SAHHAGPFVKINCGAIPRDLLESELFG 319 Query: 301 YEEGAFTGSRRGGRPGVFEAAHRGSLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRPI 360 YE GAFTG++R G+ G+ E A +G+L LDEIGE+PL LQ +LL+VL++R + R+GGTRPI Sbjct: 320 YEAGAFTGAQRQGKVGMIEVADKGTLFLDEIGELPLDLQVKLLQVLQDRTLTRLGGTRPI 379 Query: 361 PVQVRIISATHCDLEARVREGRFRADLYYRLSVLRLQLPPLRARREDIPALAEWHLKHAL 420 V VR+++AT+ DL+A V +FR+DL+YRL+V+ L +PPLR RREDI L ++H L Sbjct: 380 QVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVPLHVPPLRERREDILPL----IQHYL 435 Query: 421 AALDARAHAN--LSAEILRCAPLLCAYEWPGNVRELRNLMERLALFLAAEPLQALTAALI 478 L+A+ + LS + L L Y+WPGNVRELRN++ERL + +LI Sbjct: 436 DELNAQYDLDKRLSEQALAA---LLDYDWPGNVRELRNMVERLVV--------TAPESLI 484 Query: 479 QRVAPELVARSVDANTELPAVNDMETAPDLED--IHAALRRFRGNRAAAARHLGMSRTTL 536 + + + RS + ++L ++ + E + A+ R+ GN AAA+HL +S++T+ Sbjct: 485 RSDSLPTLLRSSELESDLARLDIKARSAHFERKIVKEAVERY-GNTRAAAKHLQVSQSTV 543 Query: 537 WRKLKDA 543 R+LKD Sbjct: 544 VRRLKDG 550 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 235 bits (599), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 143/322 (44%), Positives = 194/322 (60%), Gaps = 31/322 (9%) Query: 220 LKDLRGDSAVMETVRQSITLFARSPANVLIQGETGTGKELAAQAIHRAHPLMQGKTHAAH 279 ++ L G SA +E +R++I A P+ VLI GE+GTGKE+AA+A+H+ + ++H + Sbjct: 183 VEGLVGASAALEPIREAIKRLATVPSTVLITGESGTGKEIAARAMHK----LSNRSH--N 236 Query: 280 PFVAINCGALAESLLESELFGYEEGAFTGSRRGGRPGVFEAAHRGSLLLDEIGEMPLPLQ 339 FV INCGA+A ++ESELFG+ +GAF+G+ R G+F A G+L LDE+ E+PL +Q Sbjct: 237 HFVPINCGAVAPDIIESELFGHIKGAFSGAA-SSREGLFFYAQGGTLFLDEVAELPLAMQ 295 Query: 340 TRLLRVLEEREVVRVGGTRPIPVQVRIISATHCDLEARVREGRFRADLYYRLSVLRLQLP 399 +LLRVLEE+ + VG R IPV VR+I+AT+ ++E V+EGRFR DLYYRL+V++L +P Sbjct: 296 VKLLRVLEEKRIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQDLYYRLNVVQLHMP 355 Query: 400 PLRARREDIPALAEWHLKHALAALDARAHANLSAEILRCAPLLCAYEWPGNVRELRNLME 459 PLR R EDIPALAE+ ++ L A SA L Y WPGNVRELRNL+E Sbjct: 356 PLRERTEDIPALAEYFVRQLAQQLGVPAKKPDSALFAS----LAGYSWPGNVRELRNLIE 411 Query: 460 RLALFLAAEPLQALTAALIQRVAPELVARSVDANTELPAVNDMETAPDLEDIH--AALRR 517 R +L + +TAA NT N T +E H L Sbjct: 412 R---WLILGNISDVTAA---------------NNTGSTTTNGDVTLEAVEKQHILKILAE 453 Query: 518 FRGNRAAAARHLGMSRTTLWRK 539 GN+ A R LG+SR TL RK Sbjct: 454 VGGNKTEAGRRLGISRKTLERK 475 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 218 bits (556), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 167/442 (37%), Positives = 232/442 (52%), Gaps = 71/442 (16%) Query: 128 FGLDIVQRTYATEEDARAVVHELKAAGIKAVVG--AGLITDLAEEAGMQGIFLYSAATVR 185 G+++VQ A ++ V + AVV AG L++ G++ + + VR Sbjct: 61 LGIELVQEITAQYKNTPVAVITAFGSADNAVVALKAGAFDYLSKPVGLEQLRVM----VR 116 Query: 186 QAFEDALELARLTQLESTRGPSLPVAENLRARHHLKDLRGDSAVMETVRQSITLFARSPA 245 A R++Q + + V+ LR L G S M +R I ARS A Sbjct: 117 SAL-------RISQADEQPSAKVAVSPALR-------LMGQSEAMLALRAQIARLARSMA 162 Query: 246 NVLIQGETGTGKELAAQAIHRAHPLMQGKTHAAHPFVAINCGALAESLLESELFGYEEGA 305 V I GE+G+GKELAA+ IH + PFVA+NCGA+ E+L+E+E FGY +GA Sbjct: 163 PVAISGESGSGKELAARDIH------AQSARSDKPFVAVNCGAIPEALMEAEFFGYRKGA 216 Query: 306 FTGSRRGGRPGVFEAAHRGSLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRPIPVQVR 365 FTG+ R G F+AA+ G+LLLDE+ ++PL +Q +LLR ++ER V +VG T PV VR Sbjct: 217 FTGAV-DDRDGFFQAANGGTLLLDEVADLPLAMQVKLLRAIQERRVRKVGATTEEPVDVR 275 Query: 366 IISATHCDLEARVREGRFRADLYYRLSVLRLQLPPLRARREDIPALAEWHLKHALAALDA 425 IISATH +L V G FR DLYYRL+V+ L LPPLR R +DI LA K L LDA Sbjct: 276 IISATHQNLHDCVGRGTFRQDLYYRLNVIELNLPPLRERLDDIALLA----KAILTRLDA 331 Query: 426 RAHANLSAEILRCAPLLCAYEWPGNVRELRNLMERLALF--------------------- 464 A L+ L L Y +PGNVREL N++ER F Sbjct: 332 -GQARLTPAALEA---LLQYSFPGNVRELENILERALAFANDGVIEVSDLVLKAAHTPKA 387 Query: 465 LAAEPLQALTAALIQRVAPELVARSVDANTELPA-----VNDMETAPDLEDIHAALRRFR 519 +AAE ++AL VAP+ A+ + A ++LP ++D+E E I AL + + Sbjct: 388 VAAEMVEALAVPEQAMVAPD--AKPLAATSDLPGSLPDHLDDVER----EIIRRALSKTQ 441 Query: 520 GNRAAAARHLGMSRTTLWRKLK 541 NR AA LG+S +R+L+ Sbjct: 442 FNRTQAAELLGIS----FRQLR 459 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 210 bits (535), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 116/255 (45%), Positives = 161/255 (63%), Gaps = 19/255 (7%) Query: 222 DLRGDSAVMETVRQSITLFARSPANVLIQGETGTGKELAAQAIHRAHPLMQGKTHAAHPF 281 ++ G + M+ V ++I ++S VLI GE+G+GKEL A+A+H+ P A+ PF Sbjct: 135 EILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKHSP------RASQPF 188 Query: 282 VAINCGALAESLLESELFGYEEGAFTGSRRGGRPGVFEAAHRGSLLLDEIGEMPLPLQTR 341 +A+N A+ + LLESELFG+E GAFTG++ R G FE A G+L LDEIG+MP LQTR Sbjct: 189 IALNTAAIPKDLLESELFGHERGAFTGAQ-ATRRGRFEQAENGTLFLDEIGDMPFDLQTR 247 Query: 342 LLRVLEEREVVRVGGTRPIPVQVRIISATHCDLEARVREGRFRADLYYRLSVLRLQLPPL 401 LLRVL + RVGG +P+ VR+I+ATH +LE RVREG FR DLY+RL+V+RL+LP L Sbjct: 248 LLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEHRVREGLFREDLYHRLNVIRLRLPSL 307 Query: 402 RARREDIPALAEWHLKHALAALDARAHANLSAEILRCAP----LLCAYEWPGNVRELRNL 457 R RREDIP L L+ ++ L E+ R + L + E PGNVR+L NL Sbjct: 308 RERREDIPILTRHFLQ--------QSAKQLGVEVKRMSDSAMQFLSSLELPGNVRQLENL 359 Query: 458 MERLALFLAAEPLQA 472 + + + ++A Sbjct: 360 CNWITVMAPGQTVEA 374 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,019,698 Number of extensions: 35931 Number of successful extensions: 228 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 207 Number of HSP's successfully gapped: 7 Length of query: 549 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 461 Effective length of database: 895,685 Effective search space: 412910785 Effective search space used: 412910785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)