BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3083.p
         (384 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980413|ref|YP_001355178.1| methylcitrate synthase [Janthin...   753   0.0  
gi|152980215|ref|YP_001353201.1| type II citrate synthase [Janth...   171   8e-44

>gi|152980413|ref|YP_001355178.1| methylcitrate synthase
           [Janthinobacterium sp. Marseille]
          Length = 387

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/387 (93%), Positives = 372/387 (96%), Gaps = 3/387 (0%)

Query: 1   MSEQQAA---GFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDVADSCEFEEIA 57
           MSE QA    GFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILD+ADSCEFEEIA
Sbjct: 1   MSESQATPATGFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDIADSCEFEEIA 60

Query: 58  HLLVHGKLPTAAELRAYKAKLKALRGLPANVKAALEWLPAASHPMDVMRTGVSALGCVLP 117
           HLLVHGKLPTAAEL+AYK KLK LRGLPANVKAALEWLPAASHPMDVMRTGVSALGCV+P
Sbjct: 61  HLLVHGKLPTAAELKAYKIKLKELRGLPANVKAALEWLPAASHPMDVMRTGVSALGCVIP 120

Query: 118 EKDDHNTPGARDIADRLMASLGSMLLYWYHYSHNGKRIEVETDDDSIGAHFLHLLHGEKP 177
           EKDDHN PGARDIADRLMASLGS+LLYWYHYSHNGKRIEVETDDDSIGAHFLHLLHGEKP
Sbjct: 121 EKDDHNAPGARDIADRLMASLGSILLYWYHYSHNGKRIEVETDDDSIGAHFLHLLHGEKP 180

Query: 178 SEAWEKAMHTSLILYAEHEFNASTFTGRVIAGTGSDMYSAITGAIGALRGPKHGGANEVA 237
           S  WEKAMHTSLILYAEHEFNASTFTGRVIAGTGSDMYSAITGAIGALRGPKHGGANE A
Sbjct: 181 SALWEKAMHTSLILYAEHEFNASTFTGRVIAGTGSDMYSAITGAIGALRGPKHGGANEFA 240

Query: 238 FEIQKRYDNPDEAEADIRRRVENKEVVIGFGHPVYTISDPRNKVIKEVARKLSKEAGSTK 297
           FEIQKRY++PDEAEADI+RRVENKEVVIGFGHPVYTISDPRNKVIKEVAR LS+EAGS K
Sbjct: 241 FEIQKRYESPDEAEADIKRRVENKEVVIGFGHPVYTISDPRNKVIKEVARTLSEEAGSLK 300

Query: 298 MFDIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQR 357
           MFDIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQR
Sbjct: 301 MFDIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQR 360

Query: 358 IDNKIIRPSANYVGPEDLKFVPIGKRK 384
           IDNKIIRPSA+YVGPEDL FVP+ KRK
Sbjct: 361 IDNKIIRPSAHYVGPEDLAFVPLAKRK 387


>gi|152980215|ref|YP_001353201.1| type II citrate synthase
           [Janthinobacterium sp. Marseille]
          Length = 436

 Score =  171 bits (433), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 198/385 (51%), Gaps = 21/385 (5%)

Query: 17  LSGVTAGNTALCTVGKTGNDLHYRGYDILDVADSCEFEEIAHLLVHGKLPTAAELRAYKA 76
           +S  +  +T     G  G +L YRGY I  +A  C+F E  +LL+ G+LP  A+ + + +
Sbjct: 54  MSTASCDSTITYIDGDKG-ELLYRGYPIEQLAVKCDFLETCYLLLKGELPNEAQKKTFVS 112

Query: 77  KLKALRGLPANVKAALEWLPAASHPMDVMRTGVSALGCVLPEKDDHNTPGARDI-ADRLM 135
            +     L   ++         +HPM V+   V AL     +  D      R++ A RL+
Sbjct: 113 TVTKHTMLHEQMQFFFRGFRRDAHPMSVLVGTVGALASFYHDSLDITDAHHREVSAIRLI 172

Query: 136 ASLGSMLLYWYHYSHNGKRIEVETDDDSIGAHFLHLLHGEKPSEAWE------KAMHTSL 189
           A + +++   Y YS  G+      +D S  A+F+H++    PSE ++      +A+   L
Sbjct: 173 AKMPTLVAMSYKYS-VGQPFVYPRNDLSYSANFMHMMF-STPSEEYKISDVLVRALDRIL 230

Query: 190 ILYAEHEFNASTFTGRVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEIQKRYDNPDE 249
           IL+A+HE NAST T R+   +G++ ++ I   I  L GP HGGANE A  + K   + D+
Sbjct: 231 ILHADHEQNASTSTVRLSGSSGANPFACIAAGIACLWGPAHGGANEAALNMLKEIGSVDK 290

Query: 250 AEADIRR-RVENKEV-VIGFGHPVYTISDPRNKVIKEVARKLSKEAG--STKMFDIAERL 305
               I + + +N  V ++GFGH VY   DPR K+++E   ++ +E G     +F +A  L
Sbjct: 291 IPEFIAKVKDKNSGVKLMGFGHRVYKNFDPRAKLMRETCHEVLEELGLHDDPLFKLAMAL 350

Query: 306 ETVMWD-----IKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRID- 359
           E V  +      +K++PN+D++S +    +G+P ++FT +F +ART GW A   E   D 
Sbjct: 351 EKVALEDEYFVSRKLYPNVDFYSGIVQSALGIPVSLFTGIFAMARTVGWVAQWNEMISDP 410

Query: 360 -NKIIRPSANYVGPEDLKFVPIGKR 383
             KI RP   ++G +      + KR
Sbjct: 411 EQKIGRPRQLFIGEKQRDVPDLAKR 435


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 949,109
Number of extensions: 40494
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 299
Effective length of database: 906,776
Effective search space: 271126024
Effective search space used: 271126024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)