BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3081.p (628 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980534|ref|YP_001355180.1| propionyl-CoA synthetase [Janth... 956 0.0 gi|152980721|ref|YP_001352572.1| acetyl-CoA synthetase [Janthino... 435 e-123 gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligas... 80 4e-16 >gi|152980534|ref|YP_001355180.1| propionyl-CoA synthetase [Janthinobacterium sp. Marseille] Length = 634 Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/624 (74%), Positives = 529/624 (84%) Query: 3 YEDFYRRSIEHPDTYWAEEAQRIHWETPFTRTLDYSRAPFARWFIGGTTNLCYNAVDRHL 62 Y+ FYR S++ P ++WA +A+RI W PF++TLDY + PFA+WF+GG TNLCYNAVDRHL Sbjct: 8 YDAFYRLSVDDPHSFWATQAKRIDWHKPFSKTLDYDKPPFAKWFVGGETNLCYNAVDRHL 67 Query: 63 AERPTQAALIAISTETNSERVYDFAELHREVQAMAATMLALGVQRGDRVLIYMPMIAEAV 122 A R Q AL+AISTET++E Y +A+LH EV AA M ALGV +GDRVLIYMPM+AEA Sbjct: 68 ATRADQPALVAISTETDTETTYTYAQLHAEVSRSAAMMQALGVGQGDRVLIYMPMVAEAA 127 Query: 123 FAMLACARIGAVHSVVFGGFASNSLASRIDDAQPCLIVSADAGSRGGKVIPYKGLLDEAI 182 FAMLACARIGA+HSVVFGGFAS SLA+RIDDA P LI+SADAGSRG V PYK LLDEAI Sbjct: 128 FAMLACARIGAIHSVVFGGFASTSLATRIDDATPVLIISADAGSRGCHVTPYKCLLDEAI 187 Query: 183 NLAQHKPQRVLLVDRGLAEMARTPQRDVDYAQLRQQHLDQPVPVTWLESNDTSYVLYTSG 242 LA+HKP VL++DRGLA M RDVDYA LR+QH+D VPV WLESN SY+LYTSG Sbjct: 188 ALAEHKPAHVLMLDRGLAPMKTIEGRDVDYATLRRQHMDAVVPVAWLESNAPSYILYTSG 247 Query: 243 TTGKPKGVQRDVGGYAVALASSMQHIFCGQPGQTYFCTSDIGWVVGHSYIVYGPLIAGMA 302 TTGKPKGV RDVGGYAVALA+SM IFCG+PG+T+FCTSDIGWVVGHSYI+YGPL+AGM Sbjct: 248 TTGKPKGVLRDVGGYAVALATSMDLIFCGKPGETFFCTSDIGWVVGHSYIIYGPLLAGMT 307 Query: 303 TVLYEGLPIRPDAGIWWSIVEKYKVSRMFSAPTAIRVLKKQPPECMERYDTSSLKALYLA 362 T+LYEGLPIRPDA IWWSIVEKYKV+RM SAPTAIRVLKKQP E ++++D SSLKALYLA Sbjct: 308 TILYEGLPIRPDASIWWSIVEKYKVTRMSSAPTAIRVLKKQPLELLQKHDLSSLKALYLA 367 Query: 363 GEPLDETTSSWISGALKVPVIDNYWQTESGWPIISIAKGISDKPTRLGSPGVPMPGYRLA 422 GEPLD+TTS WISG L VPVIDNYWQTE+GWPIIS+AKG+ DKPTR GSPG PM GY+ Sbjct: 368 GEPLDQTTSDWISGVLGVPVIDNYWQTETGWPIISVAKGVGDKPTRSGSPGQPMYGYKAK 427 Query: 423 ILDEATGEPCAAGEKGVVAIEGPLPPGCMQTVYGDDARFVNTYWRSLPREVYSTFDWGIR 482 +++E TGE CA EKGVV IEGPLPPGC+QT+YGDD RFV+TYWR+ RE YSTFDWGIR Sbjct: 428 VINEETGEECAPNEKGVVIIEGPLPPGCLQTLYGDDQRFVSTYWRNFKREAYSTFDWGIR 487 Query: 483 DADGYYFILGRTDDVINVAGHRLGTREIEESISSHPNVSEVAVVGVEDKLKGQVAFAFAI 542 DADGYYFILGRTDDVINVAGHRLGTREIEESISSH NVSEVAVVGVE+ +KGQ A AF I Sbjct: 488 DADGYYFILGRTDDVINVAGHRLGTREIEESISSHANVSEVAVVGVENPIKGQCAVAFVI 547 Query: 543 PKQADAIATPEQRKALEAEIMGVVDKQIGAVGRPARVFFVSGLPKTRSGKLLRRAIQSIC 602 K A A A P++ + LEAEIM VVDK++G +GRP+ V+FVS LPKTRSGKLLRR+IQ+IC Sbjct: 548 LKNAAAAADPDEARKLEAEIMKVVDKRLGPIGRPSHVYFVSALPKTRSGKLLRRSIQAIC 607 Query: 603 EGRDAGDLPTIEDPAALEQVRAAL 626 EGRD GDL IEDPAAL+Q+R+ L Sbjct: 608 EGRDPGDLSVIEDPAALQQIRSVL 631 >gi|152980721|ref|YP_001352572.1| acetyl-CoA synthetase [Janthinobacterium sp. Marseille] Length = 664 Score = 435 bits (1119), Expect = e-123, Method: Compositional matrix adjust. Identities = 254/638 (39%), Positives = 374/638 (58%), Gaps = 25/638 (3%) Query: 3 YEDFYRRSIEHPDTYWAEEAQR-IHWETPFTRTLDYSRAPFARWFIGGTTNLCYNAVDRH 61 Y + E + +WA AQ+ + W PFT+ LD S APF +WF G N+ YN +DRH Sbjct: 36 YNALCTEAAEDYEGFWARLAQQNVLWSKPFTKRLDESNAPFYKWFEDGELNVSYNCLDRH 95 Query: 62 LAE-RPTQAALIAISTETNSERVYDFAELHREVQAMAATMLALGVQRGDRVLIYMPMIAE 120 L + ALI S + RV + EL+ V A + LG+Q+GDRV+IYMPM E Sbjct: 96 LTNGNADKVALIFESDDGKVTRV-TYKELYERVCKFANGLKELGIQKGDRVIIYMPMSIE 154 Query: 121 AVFAMLACARIGAVHSVVFGGFASNSLASRIDDAQPCLIVSADAGSRGGKVIPYKGLLDE 180 V AM ACARIGA HSVVFGGF++ SL RI DA ++++D RGGK +P K ++DE Sbjct: 155 GVAAMQACARIGATHSVVFGGFSAKSLQERIIDAGAVAVLTSDYQVRGGKNLPLKSIVDE 214 Query: 181 AINLAQHKPQR-VLLVDRGLAEMARTPQRDVDYAQL--RQQHLDQPVPVTWLESNDTSYV 237 A+ L R V++ R EM RD+ L +Q+ +PVPV + ++ Sbjct: 215 ALALGGCDTIRNVVVYKRTGGEMNFVAGRDIWLHDLVDKQKAECEPVPVG---AEHPLFI 271 Query: 238 LYTSGTTGKPKGVQRDVGGYAVALASSMQHIFCGQPGQTYFCTSDIGWVVGHSYIVYGPL 297 LYTSG+TGKPKGVQ GGY + +M+ F +P Y+CT+DIGW+ GH+Y+ YGPL Sbjct: 272 LYTSGSTGKPKGVQHSSGGYLLWAMLTMKWSFDIKPNDVYWCTADIGWITGHTYVTYGPL 331 Query: 298 IAGMATVLYEGLPIRPDAGIWWSIVEKYKVSRMFSAPTAIRVLKK----QPPECMERYDT 353 G +++EG+P+ P+AG +W +V+K+KV+ ++APTAIR L K P +YD Sbjct: 332 ACGATQIVFEGVPMFPNAGRFWDMVQKHKVTIFYTAPTAIRSLIKAADADPAVHPSKYDL 391 Query: 354 SSLKALYLAGEPLDETTSSWIS---GALKVPVIDNYWQTESGWPIISIAKGISDKPTRLG 410 SSL+ L GEP++ W G + P+ D +WQTE+G +IS G + P G Sbjct: 392 SSLRLLGSVGEPINPEAWMWYYKNIGGERCPIADTFWQTETGGHVISPMPGAT--PMVPG 449 Query: 411 SPGVPMPGYRLAILDEATGEPCAAGEKGVVAIEGPLPPGCMQTVYGDDARFVNTYW-RSL 469 S +P+PG A++DE G A G+ G++ I+ P P ++ ++ D RF +Y+ L Sbjct: 450 SCTLPLPGIAAAVVDE-VGHDLANGKGGLLVIKRPW-PSMIRNIWNDPERFQKSYFPHEL 507 Query: 470 PREVYSTFDWGIRDAD-GYYFILGRTDDVINVAGHRLGTREIEESISSHPNVSEVAVVGV 528 +Y D IR+ + GY+ I GR DDV+N++GHR+GT EIE ++ ++P V+E AVVG Sbjct: 508 GGTIYLAGDGAIRNEETGYFTITGRIDDVLNISGHRMGTMEIESALVANPIVAEAAVVGK 567 Query: 529 EDKLKGQVAFAFAIPKQADAIATPEQRKALEAEIMGVVDKQIGAVGRPARVFFVSGLPKT 588 D+ G+ AF + K++ T ++ K + E+ V K+IG + +P + F LPKT Sbjct: 568 PDETTGESICAFVVLKRSR--PTGDEAKQIAKELRDWVAKEIGPIAKPKEIRFGDNLPKT 625 Query: 589 RSGKLLRRAIQSICEGR-DAGDLPTIEDPAALEQVRAA 625 RSGK++RR ++ + + D+ T+E+PA LEQ++ A Sbjct: 626 RSGKIMRRLLRVLAKDEVITQDISTLENPAILEQLKQA 663 >gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligase [Janthinobacterium sp. Marseille] Length = 560 Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 28/229 (12%) Query: 382 VIDNYWQTESGWPIISIAKGISD-KPTRLGSP----------GVPMPGYRLAILDEATGE 430 V+++ W+ +G I G+S+ PT +P G+P+ L I+D E Sbjct: 343 VVNDKWREVTGCAICE-GYGLSETSPTATANPPTTNEFTGTIGLPVSSTELKIIDSDDNE 401 Query: 431 PCAAGEKGVVAIEGPLPPGCMQTVYGDDARFVNTYWRSLPREVYSTFDWGIRDADGYYFI 490 G G +AI GP Q + G V T + T D GI D G+ I Sbjct: 402 -VPHGSAGEIAIRGP------QVMAGYWNNPVETAQSMTADGFFKTGDIGIMDERGFTKI 454 Query: 491 LGRTDDVINVAGHRLGTREIEESISSHPNVSEVAVVGVEDKLKGQVAFAFAIPKQADAIA 550 + R D+I V+G + EIE +++HP V E A +GV D+ G+ F + + D Sbjct: 455 VDRKKDMILVSGFNVYPSEIEGVVAAHPGVLECACIGVPDEHTGEAVKLFVVRR--DPAL 512 Query: 551 TPEQRKALEAEIMGVVDKQIGAVGRPARVFFVSGLPKTRSGKLLRRAIQ 599 T EAE+M +Q +P + F + LPK+ GK+LRR ++ Sbjct: 513 T-------EAELMAYCREQFTGYKKPKSIEFRTELPKSNVGKILRRELR 554 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,580,784 Number of extensions: 70644 Number of successful extensions: 177 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 3 Length of query: 628 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 539 Effective length of database: 891,988 Effective search space: 480781532 Effective search space used: 480781532 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)