BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3078.p
         (255 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980157|ref|YP_001354134.1| exodeoxyribonuclease III [Janth...   427   e-121
gi|152979786|ref|YP_001351880.1| exodeoxyribonuclease III [Janth...    70   1e-13

>gi|152980157|ref|YP_001354134.1| exodeoxyribonuclease III
           [Janthinobacterium sp. Marseille]
          Length = 254

 Score =  427 bits (1097), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 200/253 (79%), Positives = 221/253 (87%)

Query: 1   MKIATWNVNSLKVRLPQVLKWLEENPVDVLCLQETKLTDDKFPAAEIAAAGYLVEFSGQK 60
           MKIATWNVNSLKVRLPQVL+WL +NPVDVLCLQETK  ++KFP AEI AAGY V ++GQK
Sbjct: 1   MKIATWNVNSLKVRLPQVLQWLTDNPVDVLCLQETKTVNEKFPLAEIEAAGYHVVYTGQK 60

Query: 61  TYNGVAILSRHPMNDVVKNNPLFPDEQQRIIAATIEGVRYVCAYIPNGQSLDSEKYPYKL 120
           TYNGVAILSRHP++DVVKNNPLF DE QRII  TI+GVR +CAYIPNGQSL+S+KY YKL
Sbjct: 61  TYNGVAILSRHPIDDVVKNNPLFDDEHQRIIIGTIQGVRIICAYIPNGQSLESDKYQYKL 120

Query: 121 NWLAALHEWLAQEKASNPRLALLGDYNIAPEDRDVHDPVAWQGQVLVSEPEREAFRKLQA 180
            WLA LHE LA E   +  +ALLGDYNIAPEDRDVHDPVAWQGQVLVSEPER AF ++Q 
Sbjct: 121 RWLAGLHELLAHELKQHENVALLGDYNIAPEDRDVHDPVAWQGQVLVSEPERAAFVRMQE 180

Query: 181 LGLTDSYRLFEQPEKMYSWWDYRQMGFRLNRGLRIDHILLSEELVPRCTACVIDKVPRKW 240
           +G TD++R+FEQ EK+YSWWDYRQMGFRLNRGLRIDHILLS  L  RCTACVIDKVPRKW
Sbjct: 181 MGFTDAFRMFEQAEKLYSWWDYRQMGFRLNRGLRIDHILLSPSLAKRCTACVIDKVPRKW 240

Query: 241 EQPSDHAPVIATL 253
           EQPSDH PVIATL
Sbjct: 241 EQPSDHTPVIATL 253


>gi|152979786|ref|YP_001351880.1| exodeoxyribonuclease III
           [Janthinobacterium sp. Marseille]
          Length = 259

 Score = 70.1 bits (170), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 18/259 (6%)

Query: 1   MKIATWNVNSLKVRLPQ-VLKWLEENPVDVLCLQETKLTDDKFPAAEIAAAGY--LVEFS 57
           +KI + N+N ++    +    W+ ++  D +C+QE K          +   GY     ++
Sbjct: 2   LKIVSANLNGIRSAAKKGFFTWMAKHDADFICVQELKAQAPDMTPEFLTPPGYTGYFHYA 61

Query: 58  GQKTYNGVAILSRH-PMNDVVKNNPLFPDEQQRIIAATIEGVRYVCAYIPNGQSLDSEKY 116
            +K Y+G  +  +  P +  +       D + R +      +  +  Y P+G S + E+ 
Sbjct: 62  EKKGYSGAGVYCKTVPDHVQIGFGCSEFDAEGRYVQCDFGKLSVISVYCPSGSSSE-ERQ 120

Query: 117 PYKLNWLAALHEWLAQEKASNPRLALLGDYNIAPEDRDVHDPVAWQGQVLVSE--PEREA 174
             K  ++      L + KA      + GD+NIA  + D+ +   ++G    S   PE  A
Sbjct: 121 LAKFRFMDVFLPHLLELKAQGRDFVICGDWNIAHNEIDLKN---FKGNRKNSGFLPEERA 177

Query: 175 F--RKLQALGLTDSYRLFE--QPEKMYSWWDYRQMGFRLNRGLRIDHILLSEELVPRCTA 230
           +  R    +GL D YR       E+ Y+WW  R   +  N G RID+ + +  L     +
Sbjct: 178 WLSRVFDEVGLVDVYRRLHPTTTEECYTWWSNRGQAYAKNVGWRIDYQVATPALAETARS 237

Query: 231 CVIDKVPRKWEQPSDHAPV 249
             I K     E+ SDHAP+
Sbjct: 238 AAIYKD----ERFSDHAPL 252


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 640,817
Number of extensions: 25805
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 255
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 174
Effective length of database: 921,564
Effective search space: 160352136
Effective search space used: 160352136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)