BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3076.p
         (255 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981874|ref|YP_001355013.1| hypothetical protein mma_3323 [...    73   1e-14

>gi|152981874|ref|YP_001355013.1| hypothetical protein mma_3323
           [Janthinobacterium sp. Marseille]
          Length = 469

 Score = 73.2 bits (178), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 108/256 (42%), Gaps = 14/256 (5%)

Query: 10  LACGSLSVQAQQVAPSDSATDPLQLQDRITGDLGAGLYRLDRND----LKRRSETLALPY 65
           +A   L + A     + +A  P    D IT   GAGL  + R +    +   +    LP 
Sbjct: 15  IALSVLGLSAAWTVQAQTAASPFS--DLITEPGGAGLGFVTRFESSPYVGGGTRQDLLPL 72

Query: 66  AYFDYGRFFARVDTFGIKTARMGYGYLELAGRVNVEGF------DADHGLHRRSNPIPLG 119
             ++      + +  GIK         ++  +  +EGF       +  G+  RS  + LG
Sbjct: 73  YLYEGEHISMQANRIGIKFVPSTEQRFDVYFKRRLEGFPEAGKVSSLDGMEVRSTGVDLG 132

Query: 120 LGTYQETPFGAFFLNVFRDF-NTSHGTLAEAIYAAQVDLGRVSIYPEAGVEYRSSSYNDY 178
                E P+G  + ++  D  NTS+GT     YA     GR+S+ P   +  R +  N+Y
Sbjct: 133 FTYRYEQPWGTLYASILHDVSNTSNGTELALEYAYDWRSGRLSLRPSLNISMRDAKLNNY 192

Query: 179 YFGVSASESAASGLRQYSVGSSTSPIFGLAADVPLSGDWHLNLHWRRKWLDNTVSDSPLV 238
           Y+GV A+E A +G   Y+ GS T+    L     L+  W L         D  V DSP+V
Sbjct: 193 YYGVRANE-AIAGRPAYAPGSGTNVSLNLYGTYDLTERWRLLAGASVTSFDGKVQDSPIV 251

Query: 239 RRRTDDTAIVALSYHF 254
           RR    +  V  +Y F
Sbjct: 252 RRGLQPSFFVGAAYDF 267


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 628,532
Number of extensions: 27701
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 174
Effective length of database: 921,564
Effective search space: 160352136
Effective search space used: 160352136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)